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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:Chlamydia pneumonia
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Accession:DOID:0040083 term browser browse the term
Definition:A bacterial pneumonia has_material_basis_in Chlamydia pneumoniae. (DO)
Synonyms:exact_synonym: Chlamydial Pneumonia;   Chlamydial Pneumonias;   chlamydophila pneumonia;   chlamydophila pneumonias
 primary_id: MESH:D061387
 xref: ICD10CM:J16.0;   ICD9CM:483.1

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Chlamydia pneumonia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd274 CD274 molecule ISO mRNA:increased expression:lung RGD PMID:26378990 RGD:41412180 NCBI chrNW_004936539:132,870...145,288
Ensembl chrNW_004936539:132,868...143,602 		JBrowse link
G Pdcd1 programmed cell death 1 ISO mRNA:increased expression:lung RGD PMID:26378990 RGD:41412180 NCBI chrNW_004936745:152,571...163,712
Ensembl chrNW_004936745:152,612...161,587 		JBrowse link
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta severity ISO RGD PMID:29893841 RGD:40890270 NCBI chrNW_004936623:3,672,201...3,696,959 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 16465
    disease by infectious agent 1965
      Bacterial Infections and Mycoses 946
        bacterial infectious disease 745
          commensal bacterial infectious disease 63
            chlamydia 15
              Chlamydia pneumonia 3
Path 2
Term Annotations click to browse term
  disease 16465
    disease of anatomical entity 14116
      Urogenital Diseases 4489
        Female Urogenital Diseases and Pregnancy Complications 2224
          Female Urogenital Diseases 1840
            female reproductive system disease 1837
              Sexually Transmitted Diseases 206
                Bacterial Sexually Transmitted Diseases 17
                  chlamydia 15
                    Chlamydia pneumonia 3
paths to the root