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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:blood lipoprotein cholesterol level
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Accession:CMO:0002696 term browser browse the term
Definition:Measurement of the amount of cholesterol, a eukaryotic sterol that in higher animals is the precursor of bile acids and steroid hormones and a key constituent of cell membranes, carried in lipoprotein molecules in a specified volume of blood. Lipoprotein particles are complexes that consist of protein surrounding a core of lipids.


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blood high density lipoprotein cholesterol level term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scl32 Serum cholesterol level QTL 32 IDA 5.4 RGD PMID:15452030 RGD:1302893
Q Scl76 Serum cholesterol level QTL 76 IDA 0.01 3.6 RGD PMID:25296178 RGD:10402111 NCBI chr 4:50,143,926...58,080,146 JBrowse link
Q Scl77 Serum cholesterol level QTL 77 IDA 0.01 4.1 RGD PMID:25296178 RGD:10402111 NCBI chr 4:50,143,926...58,080,146 JBrowse link
blood low density lipoprotein cholesterol level term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scl69 Serum cholesterol level QTL 69 IDA 0.001 6.3 RGD PMID:25296178 RGD:10402111
Q Scl70 Serum cholesterol level QTL 70 IDA 0.001 4.7 RGD PMID:25296178 RGD:10402111
Q Scl71 Serum cholesterol level QTL 71 IDA 0.001 5.8 RGD PMID:25296178 RGD:10402111 NCBI chr 3:2,904,329...47,904,329 JBrowse link
Q Scl72 Serum cholesterol level QTL 72 IDA 0.001 4.4 RGD PMID:25296178 RGD:10402111 NCBI chr 3:2,904,329...47,904,329 JBrowse link
Q Scl73 Serum cholesterol level QTL 73 IDA 0.001 4.7 RGD PMID:25296178 RGD:10402111 NCBI chr 3:2,904,329...47,904,329 JBrowse link
Q Scl74 Serum cholesterol level QTL 74 IDA 0.001 5.8 RGD PMID:25296178 RGD:10402111 NCBI chr 3:58,601,291...71,157,804 JBrowse link
Q Scl75 Serum cholesterol level QTL 75 IDA 0.001 4.4 RGD PMID:25296178 RGD:10402111 NCBI chr 3:58,601,291...71,157,804 JBrowse link
Q Scl78 Serum cholesterol level QTL 78 IDA 0.01 3.7 RGD PMID:25296178 RGD:10402111 NCBI chr 4:50,143,926...58,080,146 JBrowse link
Q Scl79 Serum cholesterol level QTL 79 IDA 0.001 3.5 RGD PMID:25296178 RGD:10402111
Q Scl80 Serum cholesterol level QTL 80 IDA 0.01 4.7 RGD PMID:25296178 RGD:10402111 NCBI chr11:90,461,781...96,556,255 JBrowse link
blood very low density lipoprotein cholesterol level term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scl68 Serum cholesterol level QTL 68 IDA 3.9 RGD PMID:15452030 RGD:1302893 NCBI chr17:15,781,592...60,781,592 JBrowse link
calculated plasma low density lipoprotein cholesterol level term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scl18 Serum cholesterol level QTL 18 IDA 3.7 RGD PMID:14739155 RGD:737694 NCBI chr 5:84,630,798...129,630,798 JBrowse link
serum high density lipoprotein cholesterol level term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scl12 Serum cholesterol level QTL 12 IDA 0.001 RGD PMID:8698878 RGD:61079 NCBI chr19:30,099,383...47,207,961 JBrowse link
Q Scl27 Serum cholesterol level QTL 27 IDA 3.826 RGD PMID:11721057 RGD:70849 NCBI chr18:54,490,801...86,134,022 JBrowse link
Q Scl28 Serum cholesterol level QTL 28 IDA 3.995 RGD PMID:11721057 RGD:70849 NCBI chr18:1...25,071,266 JBrowse link
Q Scl61 Serum cholesterol level QTL 61 IDA 4.36 RGD PMID:10720472 RGD:619689 NCBI chr17:6,221,998...58,177,198 JBrowse link
Term paths to the root
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Term Annotations click to browse term
  clinical measurement 2369
    blood measurement 443
      blood chemistry measurement 426
        blood protein measurement 188
          blood lipoprotein measurement 70
            blood lipoprotein level 70
              blood lipoprotein cholesterol level 19
                blood chylomicron cholesterol level + 0
                blood high density lipoprotein cholesterol level + 7
                blood intermediate density lipoprotein cholesterol level + 0
                blood low density lipoprotein cholesterol level + 11
                blood non-high density lipoprotein cholesterol level 0
                blood very low density lipoprotein cholesterol level + 1
paths to the root