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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio
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Accession:CMO:0001980 term browser browse the term
Definition:A calculated measurement in which the value representing the area of the spinal cord vental horn that demonstrates histological staining for the MHC Class II RT1A molecule is divided by value representing the total area of the spinal cord ventral horn, and presented as a ratio, fraction, quotient or percentage. MHC Class II RT1A is a class II major histocompatibility complex protein that is involved in antigen presentation and has been implicated in allograft rejection and autoimmunity.
Synonyms:exact_synonym: area of spinal cord ventral horn stained for MHC Class II RT1A to total area of spinal cord ventral horn ratio



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MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Neuinf2 Neuroinflammation QTL 2 IDA RGD PMID:14586010 RGD:1358788 NCBI chr10:6,154,377...6,357,896 JBrowse link
Q Neuinf3 Neuroinflammation QTL 3 IDA RGD PMID:14586010 RGD:1358788 NCBI chr10:3,406,320...5,387,112 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  clinical measurement 2369
    tissue composition measurement 26
      tissue molecular composition measurement 26
        spinal cord molecular composition measurement 11
          spinal cord protein/peptide composition measurement 6
            spinal cord MHC class II protein measurement 5
              MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio 2
Path 2
Term Annotations click to browse term
  clinical measurement 2369
    nervous system measurement 63
      central nervous system measurement 29
        spinal cord measurement 11
          spinal cord morphological measurement 11
            spinal cord ventral horn morphological measurement 2
              spinal cord ventral horn area 2
                calculated spinal cord ventral horn area measurement 2
                  MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio 2
paths to the root