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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:body movement/balance measurement
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Accession:CMO:0001766 term browser browse the term
Definition:Any measurement related to a change of place or position of all or part of the body of an organism, or to the ability of an organism to maintain bodily equilibrium and postural control, the motor control that stabilizes the body in space by integrating sensory input about body position (somatosensory, visual, and vestibular input) with motor output to coordinate the action of muscles and keep the body's center of mass within its base of support.



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acoustic startle response measurement term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Ppulsi1 Prepulse inhibition QTL 1 IDA RGD PMID:12426667 RGD:629579 NCBI chr 2:136,916,935...213,594,495 JBrowse link
Q Ppulsi2 Prepulse inhibition QTL 2 IDA RGD PMID:12426667 RGD:629579 NCBI chr18:52,292,875...73,997,283 JBrowse link
amount of experiment time spent in a discrete space in an experimental apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr12 Anxiety related response QTL 12 IDA RGD PMID:12972953 RGD:731213 NCBI chr 1:130,636,910...175,636,910 JBrowse link
Q Anxrr14 Anxiety related response QTL 14 IDA RGD PMID:12972953 RGD:731213 NCBI chr 1:130,636,910...175,636,910 JBrowse link
Q Anxrr15 Anxiety related response QTL 15 IDA RGD PMID:12972953 RGD:731213 NCBI chr 8:95,718,998...123,900,184 JBrowse link
Q Anxrr33 Anxiety related response QTL 33 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:144,639,524...182,687,754 JBrowse link
Q Anxrr34 Anxiety related response QTL 34 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:144,639,524...182,687,754 JBrowse link
Q Anxrr36 Anxiety related response QTL 36 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr37 Anxiety related response QTL 37 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr38 Anxiety related response QTL 38 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr42 Anxiety related response QTL 42 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:144,639,524...182,687,754 JBrowse link
Q Anxrr44 Anxiety related response QTL 44 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr45 Anxiety related response QTL 45 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:110,870,972...155,870,972 JBrowse link
Q Anxrr46 Anxiety related response QTL 46 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:110,870,972...155,870,972 JBrowse link
Q Anxrr48 Anxiety related response QTL 48 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:10,084,089...55,084,089 JBrowse link
Q Anxrr52 Anxiety related response QTL 52 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr53 Anxiety related response QTL 53 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr56 Anxiety related response QTL 56 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:85,253,748...150,276,390 JBrowse link
Q Anxrr57 Anxiety related response QTL 57 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:147,278,504...167,139,601 JBrowse link
Q Despr10 Despair related QTL 10 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 2:114,654,253...159,654,253 JBrowse link
Q Despr11 Despair related QTL 11 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 3:28,468,571...73,468,571 JBrowse link
Q Despr12 Despair related QTL 12 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 6:1...27,574,569 JBrowse link
Q Despr13 Despair related QTL 13 IDA RGD PMID:15457344 RGD:1302894 NCBI chr15:1...29,912,054 JBrowse link
Q Despr14 Despair related QTL 14 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 8:7,688,955...52,688,955 JBrowse link
Q Despr15 Despair related QTL 15 IDA RGD PMID:15457344 RGD:1302894 NCBI chr20:1...24,159,021 JBrowse link
Q Despr8 Despair related QTL 8 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 1:1...24,744,506 JBrowse link
Q Despr9 Despair related QTL 9 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 1:167,909,849...212,909,849 JBrowse link
amount of time spent in voluntary immobility term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Despr1 Despair related QTL 1 IDA RGD PMID:15457344 RGD:1302894
Q Despr2 Despair related QTL 2 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 3:97,084,464...142,084,464 JBrowse link
Q Despr3 Despair related QTL3 IDA RGD PMID:15457344 RGD:1302894
Q Despr4 Despair related QTL 4 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 8:7,688,955...52,688,955 JBrowse link
Q Despr5 Despair related QTL 5 IDA RGD PMID:15457344 RGD:1302894 NCBI chr 9:1,254,084...46,254,084 JBrowse link
Q Despr6 Despair related QTL 6 IDA RGD PMID:15457344 RGD:1302894 NCBI chr16:1...39,533,930 JBrowse link
Q Despr7 Despair related QTL 7 IDA RGD PMID:15457344 RGD:1302894 NCBI chr16:1...44,977,551 JBrowse link
amplitude of the acoustic startle response term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr23 Anxiety related response QTL 23 IDA RGD PMID:11932246 RGD:625384 NCBI chr15:40,631,268...46,187,442 JBrowse link
average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Memor10 Memory QTL 10 IDA RGD PMID:16837653 RGD:1581615 NCBI chr 3:145,956,084...161,299,569 JBrowse link
Q Memor11 Memory QTL 11 IDA RGD PMID:16837653 RGD:1581615 NCBI chr 9:36,962,359...77,814,038 JBrowse link
Q Memor12 Memory QTL 12 IDA RGD PMID:16837653 RGD:1581615 NCBI chr20:2,606,836...47,606,836 JBrowse link
Q Memor2 Memory QTL 2 IDA RGD PMID:16837653 RGD:1581615 NCBI chr  X:20,990,947...41,052,531 JBrowse link
Q Memor8 Memory QTL 8 IDA RGD PMID:16837653 RGD:1581615 NCBI chr 2:150,341,585...189,039,377 JBrowse link
Q Memor9 Memory QTL 9 IDA RGD PMID:16837653 RGD:1581615 NCBI chr 2:199,341,726...234,244,620 JBrowse link
defensive burying duration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Stresp8 Stress response QTL 8 IDA RGD PMID:15685431 RGD:1358767 NCBI chr 7:90,482,196...135,012,528 JBrowse link
difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Memor13 Memory QTL 13 IDA RGD PMID:16837653 RGD:1581615 NCBI chr  X:41,052,407...146,860,749 JBrowse link
Q Memor14 Memory QTL 14 IDA RGD PMID:16837653 RGD:1581615 NCBI chr  X:93,956,491...138,956,491 JBrowse link
Q Memor15 Memory QTL 15 IDA RGD PMID:16837653 RGD:1581615 NCBI chr  X:103,312,877...148,312,877 JBrowse link
Q Memor16 Memory QTL 16 IDA RGD PMID:16837653 RGD:1581615 NCBI chr 9:22,133,322...49,968,732 JBrowse link
Q Memor17 Memory QTL 17 IDA RGD PMID:16837653 RGD:1581615 NCBI chr 9:49,968,546...71,098,346 JBrowse link
distance moved per unit of time into, out of or within a discrete space in an experimental apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr43 Anxiety related response QTL 43 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:144,639,524...182,687,754 JBrowse link
Q Anxrr54 Anxiety related response QTL 54 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:114,627,026...159,627,026 JBrowse link
Q Anxrr58 Anxiety related response QTL 58 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:119,463,257...147,278,687 JBrowse link
duration of loss of righting reflex term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Alcrsp1 Alcohol response QTL 1 IDA RGD PMID:15608595 RGD:1334439 NCBI chr 1:100,979,852...145,979,852 JBrowse link
Q Alcrsp17 Alcohol response QTL 17 IDA RGD PMID:15608595 RGD:1334439 NCBI chr 2:149,559,561...249,053,267 JBrowse link
Q Alcrsp18 Alcohol response QTL 18 IDA RGD PMID:15608595 RGD:1334439 NCBI chr 5:35,189,153...141,643,988 JBrowse link
Q Alcrsp19 Alcohol response QTL 19 IDA RGD PMID:19500156 RGD:2317807 NCBI chr 1:100,979,852...145,979,852 JBrowse link
Q Alcrsp2 Alcohol response QTL 2 IDA RGD PMID:15608595 RGD:1334439 NCBI chr 2:149,559,561...221,167,075 JBrowse link
Q Alcrsp20 Alcohol response QTL 20 IDA RGD PMID:19500156 RGD:2317807
Q Alcrsp21 Alcohol response QTL 21 IDA RGD PMID:19500156 RGD:2317807 NCBI chr19:3,204,777...48,204,777 JBrowse link
Q Alcrsp22 Alcohol response QTL 22 IDA RGD PMID:19500156 RGD:2317807 NCBI chr20:1...27,339,237 JBrowse link
Q Alcrsp23 Alcohol response QTL 23 IDA RGD PMID:19500156 RGD:2317807
Q Alcrsp24 Alcohol response QTL 24 IDA RGD PMID:19500156 RGD:2317807 NCBI chr 8:1...25,902,202 JBrowse link
Q Alcrsp25 Alcohol response QTL 25 IDA RGD PMID:19500156 RGD:2317807 NCBI chr20:17,697,550...54,435,887 JBrowse link
Q Alcrsp26 Alcohol response QTL 26 IDA RGD PMID:19500156 RGD:2317807 NCBI chr 3:145,526,770...169,034,231 JBrowse link
Q Alcrsp27 Alcohol response QTL 27 IDA RGD PMID:19500156 RGD:2317807 NCBI chr14:56,631,369...101,631,369 JBrowse link
Q Alcrsp28 Alcohol response QTL 28 IDA RGD PMID:19500156 RGD:2317807 NCBI chr 2:212,828,222...249,053,267 JBrowse link
Q Alcrsp3 Alcohol response QTL 3 IDA RGD PMID:15608595 RGD:1334439 NCBI chr 5:12,689,285...57,689,285 JBrowse link
Q Alcrsp4 Alcohol response QTL 4 IDA RGD PMID:15608595 RGD:1334439 NCBI chr 6:67,262,953...112,262,953 JBrowse link
Q Alcrsp5 Alcohol response QTL 5 IDA RGD PMID:15608595 RGD:1334439 NCBI chr12:12,812,385...46,669,029 JBrowse link
Q Alcrsp6 Alcohol response QTL 6 IDA RGD PMID:15608595 RGD:1334439 NCBI chr13:52,362,171...97,362,171 JBrowse link
Q Alcrsp7 Alcohol response QTL 7 IDA RGD PMID:15608595 RGD:1334439 NCBI chr20:1...27,339,237 JBrowse link
maximum distance run on treadmill term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Arunc1 Aerobic running capacity QTL 1 IDA RGD PMID:12079278 RGD:619535 NCBI chr16:31,951,520...60,148,445 JBrowse link
Q Arunc2 Aerobic running capacity QTL 2 IDA RGD PMID:12079278 RGD:619535 NCBI chr16:68,532,716...75,029,966 JBrowse link
Q Arunc3 Aerobic running capacity QTL 3 IDA RGD PMID:12079278 RGD:619535 NCBI chr 3:8,227,194...33,703,538 JBrowse link
Q Arunc4 Aerobic running capacity QTL 4 IDA RGD PMID:17179209 RGD:1598978 NCBI chr16:380,245...80,345,693 JBrowse link
Q Arunc5 Aerobic running capacity QTL 5 IDA RGD PMID:17179209 RGD:1598978 NCBI chr 3:73,376,539...118,376,539 JBrowse link
measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr32 Anxiety related response QTL 32 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:144,639,524...182,687,754 JBrowse link
Q Anxrr51 Anxiety related response QTL 51 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:124,778,595...169,778,595 JBrowse link
Q Memor18 Memory QTL 18 IDA RGD PMID:23469157 RGD:7394833 NCBI chr17:18,640,182...63,640,182 JBrowse link
Q Memor19 Memory QTL 19 IDA RGD PMID:23861781 RGD:7495755
number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr13 Anxiety related response QTL 13 IDA RGD PMID:12972953 RGD:731213 NCBI chr 1:83,547,917...128,547,917 JBrowse link
number of approaches toward negative stimulus before onset of defensive burying response term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Stresp10 Stress response QTL 10 IDA RGD PMID:15685431 RGD:1358767 NCBI chr 6:1...27,574,569 JBrowse link
Q Stresp11 Stress response QTL 11 IDA RGD PMID:15685431 RGD:1358767 NCBI chr 8:73,473,045...118,473,045 JBrowse link
Q Stresp12 Stress response QTL 12 IDA RGD PMID:15685431 RGD:1358767 NCBI chr13:38,433,408...83,433,408 JBrowse link
Q Stresp9 Stress response QTL 9 IDA RGD PMID:15685431 RGD:1358767
number of entries into a discrete space in an experimental apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Activ3 Activity QTL 3 IDA RGD PMID:19089625 RGD:2306974 NCBI chr 2:168,594,495...213,594,495 JBrowse link
Q Activ4 Activity QTL 4 IDA RGD PMID:19089625 RGD:2306974 NCBI chr16:1...33,418,960 JBrowse link
Q Activ5 Activity QTL 5 IDA RGD PMID:19089625 RGD:2306974 NCBI chr16:42,396,345...84,729,064 JBrowse link
Q Anxrr10 Anxiety related response QTL 10 IDA unprompted RGD PMID:14739700 RGD:737695 NCBI chr 3:38,517,803...83,517,803 JBrowse link
Q Anxrr11 Anxiety related response QTL 11 IDA unprompted RGD PMID:14739700 RGD:737695 NCBI chr18:30,039,813...75,039,813 JBrowse link
Q Anxrr16 Anxiety related response QTL 16 IDA RGD PMID:10523818 RGD:631324 NCBI chr 4:93,308,457...167,139,447 JBrowse link
Q Anxrr17 Anxiety related response QTL 17 IDA RGD PMID:10523818 RGD:631324 NCBI chr 7:924,703...115,097,879 JBrowse link
Q Anxrr21 Anxiety related response QTL 21 IDA prompted RGD PMID:18971309 RGD:2313899 NCBI chr 5:66,174,080...124,160,948 JBrowse link
Q Anxrr29 Anxiety related response QTL 29 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr31 Anxiety related response QTL 31 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr39 Anxiety related response QTL 39 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr41 Anxiety related response QTL 41 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr47 Anxiety related response QTL 47 IDA RGD PMID:21516450 RGD:6218999 NCBI chr 4:10,084,089...55,084,089 JBrowse link
Q Anxrr50 Anxiety related response QTL 50 IDA RGD PMID:21516450 RGD:6218999
Q Anxrr7 Anxiety related response QTL 7 IDA unprompted RGD PMID:14739700 RGD:737695 NCBI chr 2:118,189,491...163,189,491 JBrowse link
Q Anxrr8 Anxiety related response QTL 8 IDA unprompted RGD PMID:14739700 RGD:737695 NCBI chr 7:46,590,070...91,590,070 JBrowse link
Q Anxrr9 Anxiety related response QTL 9 IDA unprompted RGD PMID:14739700 RGD:737695 NCBI chr 8:93,535,351...123,900,184 JBrowse link
number of periods of voluntary immobility term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr22 Anxiety related response QTL 22 IDA RGD PMID:11932246 RGD:625384 NCBI chr10:61,345,276...98,211,570 JBrowse link
number of photobeam interruptions in an experimental apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Activ1 Activity QTL 1 IDA RGD PMID:12660808 RGD:631228 NCBI chr 8:102,370,617...108,923,645 JBrowse link
number of rearing movements in an experimental apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr18 Anxiety related response QTL 18 IDA RGD PMID:16490266 RGD:1578499 NCBI chr 2:200,990,457...245,990,457 JBrowse link
Q Anxrr19 Anxiety related response QTL 19 IDA RGD PMID:16490266 RGD:1578499 NCBI chr10:18,167,841...63,167,841 JBrowse link
Q Anxrr20 Anxiety related response QTL 20 IDA RGD PMID:16490266 RGD:1578499 NCBI chr18:41,432,971...83,828,827 JBrowse link
number of rearing movements with lid-pushing in an experimental apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr55 Anxiety related response QTL 55 IDA RGD PMID:27044679 RGD:11566049 NCBI chr 4:32,583,980...114,627,242 JBrowse link
percentage of entries into a discrete space in an experimental apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr3 Anxiety related response QTL 3 IDA RGD PMID:14739700 RGD:737695 NCBI chr 2:9,023,519...54,023,519 JBrowse link
Q Anxrr4 Anxiety related response QTL 4 IDA RGD PMID:14739700 RGD:737695 NCBI chr 5:130,130,159...166,875,058 JBrowse link
Q Anxrr5 Anxiety related response QTL 5 IDA RGD PMID:14739700 RGD:737695 NCBI chr 6:84,130,881...129,130,881 JBrowse link
Q Anxrr6 Anxiety related response QTL 6 IDA RGD PMID:14739700 RGD:737695 NCBI chr 7:15,573,889...60,573,889 JBrowse link
post-insult time to onset of defensive burying response term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Stresp13 Stress response QTL 13 IDA RGD PMID:15685431 RGD:1358767
rearing measurement term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Activ2 Activity QTL 2 IDA RGD PMID:12660808 RGD:631228 NCBI chr 8:41,866,876...86,866,876 JBrowse link
self mutilation severity score term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pain1 Pain QTL 1 IDA RGD PMID:17560719 RGD:1643003 NCBI chr 2:26,999,571...48,268,661 JBrowse link
Q Pain2 Pain QTL 2 IDA RGD PMID:17560719 RGD:1643003 NCBI chr 7:9,462,246...98,011,544 JBrowse link
tameness/aggressiveness composite score term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Anxrr24 Anxiety related response QTL 24 IDA RGD PMID:19363126 RGD:2313383 NCBI chr 1:48,963,584...144,267,916 JBrowse link
Q Anxrr25 Anxiety related response QTL 25 IDA RGD PMID:19363126 RGD:2313383 NCBI chr 8:89,265,192...114,019,816 JBrowse link
Q Anxrr26 Anxiety related response QTL 26 IDA RGD PMID:19363126 RGD:2313383 NCBI chr19:49,976,481...53,225,766 JBrowse link
Q Anxrr27 Anxiety related response QTL 27 IDA RGD PMID:19363126 RGD:2313383 NCBI chr 4:17,933,508...62,933,508 JBrowse link
Q Anxrr28 Anxiety related response QTL 28 IDA RGD PMID:19363126 RGD:2313383 NCBI chr 6:100,671,796...132,340,886 JBrowse link
total horizontal distance resulting from voluntary locomotion in an experimental apparatus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Memor1 Memory QTL 1 IDA RGD PMID:16837653 RGD:1581615 NCBI chr  X:103,312,877...148,312,877 JBrowse link
Q Memor3 Memory QTL 3 IDA RGD PMID:16837653 RGD:1581615 NCBI chr 1:143,506,580...212,458,660 JBrowse link
Q Memor4 Memory QTL 4 IDA RGD PMID:16837653 RGD:1581615 NCBI chr 8:9,712,220...53,356,647 JBrowse link
Q Memor5 Memory QTL 5 IDA RGD PMID:16837653 RGD:1581615 NCBI chr17:40,540,041...80,387,013 JBrowse link
Q Memor6 Memory QTL 6 IDA RGD PMID:16837653 RGD:1581615 NCBI chr20:29,244,388...54,435,887 JBrowse link
Q Memor7 Memory QTL 7 IDA RGD PMID:16837653 RGD:1581615

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  clinical measurement 2369
    body movement/balance measurement 125
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      body movement measurement + 125
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