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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:bone mineral morphological measurement
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Accession:CMO:0001552 term browser browse the term
Definition:Any measurement of the form or content of one or more of the mineral components of bone.


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bone mineral content term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd82 Bone mineral density QTL 82 IDA update to tibia specific term RGD PMID:21818327 RGD:5684953 NCBI chr 2:59,324,377...103,795,077 JBrowse link
Q Bmd83 Bone mineral density QTL 82 IDA update to tibia specific term RGD PMID:21818327 RGD:5684953
Q Bmd84 Bone mineral density QTL 84 IDA update to tibia specific term RGD PMID:21818327 RGD:5684953 NCBI chr 8:42,692,684...50,095,447 JBrowse link
Q Bmd87 Bone mineral density QTL 87 IDA update to tibia specific term RGD PMID:21818327 RGD:5684953 NCBI chr 4:56,647,776...78,882,945 JBrowse link
bone mineral density term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd40 Bone mineral density QTL 40 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:201,554,356...246,554,356 JBrowse link
Q Bmd42 Bone mineral density QTL 42 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:171,629,477...216,629,477 JBrowse link
Q Bmd47 Bone mineral density QTL 47 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:20,662,448...65,662,448 JBrowse link
Q Bmd49 Bone mineral density QTL 49 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:88,862,519...133,862,519 JBrowse link
Q Bmd51 Bone mineral density QTL 51 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 6:1...27,574,569 JBrowse link
Q Bmd67 Bone mineral density QTL 67 IDA RGD PMID:18707222 RGD:2300109 NCBI chr18:1...34,291,613 JBrowse link
Q Bmd85 Bone mineral density QTL 85 IDA update to tibia specific term RGD PMID:21818327 RGD:5684953 NCBI chr 2:59,324,377...103,795,077 JBrowse link
Q Bmd86 Bone mineral density QTL 86 IDA update to tibia specific term RGD PMID:21818327 RGD:5684953 NCBI chr 4:56,647,776...78,882,945 JBrowse link
compact volumetric bone mineral density term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd10 Bone mineral density QTL 10 IDA femoral neck cortical volumetric bone mineral density RGD PMID:16461031 RGD:1578307
Q Bmd12 Bone mineral density QTL 12 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:135,699,135...180,699,135 JBrowse link
Q Bmd16 Bone mineral density QTL 16 IDA RGD PMID:16461031 RGD:1578307 NCBI chr10:96,703,043...107,057,807 JBrowse link
Q Bmd24 Bone mineral density QTL 24 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 2:43,162,366...111,362,592 JBrowse link
Q Bmd25 Bone mineral density QTL 25 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:49,444,551...81,709,989 JBrowse link
Q Bmd69 Bone mineral density QTL 69 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:1...32,356,093 JBrowse link
Q Bmd7 Bone mineral density QTL 7 IDA femoral neck cortical volumetric bone mineral density RGD PMID:16461031 RGD:1578307 NCBI chr 1:509,108...43,284,926 JBrowse link
Q Bmd70 Bone mineral density QTL 70 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:43,284,731...118,944,897 JBrowse link
Q Bmd71 Bone mineral density QTL 71 IDA RGD PMID:19113924 RGD:2312767 NCBI chr10:5,387,014...50,387,014 JBrowse link
Q Bmd73 Bone mineral density QTL 73 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:11,481,312...82,174,945 JBrowse link
Q Bmd77 Bone mineral density QTL 77 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 3:27,494,621...50,302,886 JBrowse link
total volumetric bone mineral density term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd11 Bone mineral density QTL 11 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:90,850,165...135,850,165 JBrowse link
Q Bmd14 Bone mineral density QTL 14 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 6:11,735,669...72,593,685 JBrowse link
Q Bmd17 Bone mineral density QTL 17 IDA RGD PMID:16461031 RGD:1578307 NCBI chr15:22,806,240...98,288,169 JBrowse link
Q Bmd19 Bone mineral density QTL 19 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 2:43,162,366...111,362,592 JBrowse link
Q Bmd20 Bone mineral density QTL 20 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 6:5,074,497...19,988,050 JBrowse link
Q Bmd21 Bone mineral density QTL 21 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bmd22 Bone mineral density QTL 22 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:49,444,551...81,709,989 JBrowse link
Q Bmd23 Bone mineral density QTL 23 IDA RGD PMID:18282130 RGD:2293456 NCBI chr18:51,464,733...63,636,873 JBrowse link
Q Bmd26 Bone mineral density QTL 26 IDA RGD PMID:18282130 RGD:2293456 NCBI chr12:15,872,653...32,974,238 JBrowse link
Q Bmd30 Bone mineral density QTL 30 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:49,444,551...81,709,989 JBrowse link
Q Bmd6 Bone mineral density QTL 6 IDA femoral neck total volumetric bone mineral density RGD PMID:16461031 RGD:1578307 NCBI chr 1:509,108...43,284,926 JBrowse link
Q Bmd72 Bone mineral density QTL 72 IDA update to tibia metaphysis total BMD RGD PMID:19113924 RGD:2312767 NCBI chr 1:11,481,312...82,174,945 JBrowse link
Q Bmd74 Bone mineral density QTL 74 IDA update to tibia metaphysis total BMD RGD PMID:19113924 RGD:2312767 NCBI chr 1:82,174,743...118,944,897 JBrowse link
Q Bmd75 Bone mineral density QTL 75 IDA update to tibia metaphysis total BMD RGD PMID:19113924 RGD:2312767 NCBI chr 2:215,377,404...237,938,339 JBrowse link
Q Bmd76 Bone mineral density QTL 76 IDA update to tibia metaphysis total BMD RGD PMID:19113924 RGD:2312767 NCBI chr 3:27,494,621...50,302,886 JBrowse link
Q Bmd78 Bone mineral density QTL 78 IDA update to tibia metaphysis total BMD RGD PMID:19113924 RGD:2312767 NCBI chr 5:144,377,876...161,317,411 JBrowse link
Q Bmd79 Bone mineral density QTL 79 IDA update to tibia metaphysis total BMD RGD PMID:19113924 RGD:2312767 NCBI chr 7:94,811,085...116,738,842 JBrowse link
Q Bmd80 Bone mineral density QTL 80 IDA update to tibia metaphysis total BMD RGD PMID:19113924 RGD:2312767 NCBI chr10:19,606,483...64,606,483 JBrowse link
Q Bmd81 Bone mineral density QTL 81 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 3:38,710,365...50,302,886 JBrowse link
Q Bmd88 Bone mineral density QTL 88 IDA update to femur specific term RGD PMID:18282130 RGD:2293456 NCBI chr 9:23,754,024...58,157,242 JBrowse link
Q Bmd9 Bone mineral QTL density 9 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 2:11,852,062...49,003,364 JBrowse link
trabecular volumetric bone mineral density term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd13 Bone mineral density QTL 13 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 5:103,689,353...148,689,353 JBrowse link
Q Bmd15 Bone mineral density QTL 15 IDA femoral neck trabecular volumetric bone mineral density RGD PMID:16461031 RGD:1578307 NCBI chr 7:9,866,467...60,460,686 JBrowse link
Q Bmd18 Bone mineral density QTL 18 IDA RGD PMID:16461031 RGD:1578307 NCBI chr15:22,806,240...98,288,169 JBrowse link
Q Bmd27 Bone mineral density QTL 27 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 1:224,054,293...243,747,962 JBrowse link
Q Bmd28 Bone mineral density QTL 28 IDA RGD PMID:18282130 RGD:2293456 NCBI chr17:4,354,487...27,028,127 JBrowse link
Q Bmd8 Bone mineral density QTL 8 IDA femoral neck trabecular volumetric bone mineral density RGD PMID:16461031 RGD:1578307 NCBI chr 1:49,393,172...94,393,172 JBrowse link
volumetric bone mineral density term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd1 Bone mineral density QTL 1 IDA femoral midshaft volumetric bone mineral density RGD PMID:16180139 RGD:1553896 NCBI chr 1:509,108...86,060,548 JBrowse link
Q Bmd3 Bone mineral density QTL 3 IDA distal femur total volumetric bone mineral density RGD PMID:16180139 RGD:1553896 NCBI chr 8:40,952,565...123,900,184 JBrowse link
Q Bmd4 Bone mineral density QTL 4 IDA femoral midshaft total volumetric bone mineral density RGD PMID:16180139 RGD:1553896 NCBI chr10:19,816,042...99,406,971 JBrowse link
Q Bmd41 Bone mineral density QTL 41 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:171,629,477...216,629,477 JBrowse link
Q Bmd43 Bone mineral density QTL 43 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:171,629,477...216,629,477 JBrowse link
Q Bmd44 Bone mineral density QTL 44 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:56,949,932...101,949,932 JBrowse link
Q Bmd45 Bone mineral density QTL 45 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:88,862,519...133,862,519 JBrowse link
Q Bmd46 Bone mineral density QTL 46 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:88,862,519...133,862,519 JBrowse link
Q Bmd48 Bone mineral density QTL 48 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:179,335,906...224,335,906 JBrowse link
Q Bmd5 Bone mineral density QTL 5 IDA lumbar vertebra 5 cortical volumetric bone mineral density RGD PMID:16180139 RGD:1553896
Q Bmd50 Bone mineral density QTL 50 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 4:60,928,534...105,928,534 JBrowse link
Q Bmd52 Bone mineral density QTL 52 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 6:1...27,574,569 JBrowse link
Q Bmd53 Bone mineral density QTL 53 IDA RGD PMID:18707222 RGD:2300109
Q Bmd54 Bone mineral density QTL 54 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bmd55 Bone mineral density QTL 55 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 8:76,468,691...121,468,691 JBrowse link
Q Bmd56 Bone mineral density QTL 56 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 8:95,718,998...123,900,184 JBrowse link
Q Bmd57 Bone mineral density QTL 57 IDA RGD PMID:18707222 RGD:2300109 NCBI chr10:69,738,412...107,211,142 JBrowse link
Q Bmd58 Bone mineral density QTL 58 IDA RGD PMID:18707222 RGD:2300109 NCBI chr10:26,944,628...71,944,628 JBrowse link
Q Bmd59 Bone mineral density QTL 59 IDA RGD PMID:18707222 RGD:2300109 NCBI chr12:10,474,137...46,669,029 JBrowse link
Q Bmd60 Bone mineral density QTL 60 IDA RGD PMID:18707222 RGD:2300109 NCBI chr14:1...26,541,967 JBrowse link
Q Bmd61 Bone mineral density QTL 61 IDA RGD PMID:18707222 RGD:2300109 NCBI chr14:1...26,541,967 JBrowse link
Q Bmd62 Bone mineral density QTL 62 IDA RGD PMID:18707222 RGD:2300109 NCBI chr15:11,111,142...56,111,142 JBrowse link
Q Bmd63 Bone mineral density QTL 63 IDA RGD PMID:18707222 RGD:2300109 NCBI chr15:11,111,142...56,111,142 JBrowse link
Q Bmd64 Bone mineral density QTL 64 IDA RGD PMID:18707222 RGD:2300109 NCBI chr16:37,752,156...82,752,156 JBrowse link
Q Bmd65 Bone mineral density QTL 65 IDA RGD PMID:18707222 RGD:2300109 NCBI chr18:28,964,853...73,964,853 JBrowse link
Q Bmd66 Bone mineral density QTL 66 IDA RGD PMID:18707222 RGD:2300109 NCBI chr18:28,964,853...73,964,853 JBrowse link
Q Bmd68 Bone mineral density QTL 68 IDA RGD PMID:18707222 RGD:2300109 NCBI chr20:25,106,722...54,435,887 JBrowse link
Q Bmd92 Bone mineral density QTL 92 IDA RGD PMID:27113531 RGD:11353859 NCBI chr 9:46,114,199...91,114,199 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  clinical measurement 2369
    body morphological measurement 733
      skeleton morphological measurement 201
        bone morphological measurement 179
          bone mineral morphological measurement 78
            bone mineral content + 4
            bone mineral density + 8
            volumetric bone mineral density + 66
Path 2
Term Annotations click to browse term
  clinical measurement 2369
    musculoskeletal system measurement 297
      skeletal system measurement 235
        skeleton morphological measurement 201
          bone morphological measurement 179
            bone mineral morphological measurement 78
              bone mineral content + 4
              bone mineral density + 8
              volumetric bone mineral density + 66
paths to the root