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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:femur morphological measurement
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Accession:CMO:0001377 term browser browse the term
Definition:Any measurement of the physical form or structure of the femur, the major bone in the upper portion of the hindlimb of quadrupeds or the lower limb of bipeds.
Synonyms:narrow_synonym: intertrochanteric region size;   trochanter size
 xref: EFO:0010074;   EFO:0010075


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femoral neck cortical cross-sectional area term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd31 Bone mineral density QTL 31 IDA RGD PMID:18282130 RGD:2293456 NCBI chr17:4,354,487...27,028,127 JBrowse link
Q Bmd38 Bone mineral density QTL 38 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 5:8,948,228...53,948,228 JBrowse link
Q Bss10 Bone structure and strength QTL 10 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 1:49,393,172...159,356,837 JBrowse link
Q Bss11 Bone structure and strength QTL 11 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 2:114,837,527...211,674,221 JBrowse link
Q Bss17 Bone structure and strength QTL 17 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 9:3,368,652...13,533,896 JBrowse link
Q Bss21 Bone structure and strength QTL 21 IDA RGD PMID:16461031 RGD:1578307 NCBI chr18:11,791,518...83,218,561 JBrowse link
femoral neck cross-sectional area term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd29 Bone mineral density QTL 29 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bmd90 Bone mineral density QTL 90 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:49,444,551...81,709,989 JBrowse link
Q Bmd91 Bone mineral density QTL 91 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 9:23,754,144...83,851,531 JBrowse link
Q Bss12 Bone structure and strength QTL 12 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:60,220,938...105,220,938 JBrowse link
Q Bss20 Bone structure and strength QTL 20 IDA RGD PMID:16461031 RGD:1578307 NCBI chr18:11,791,518...83,218,561 JBrowse link
femoral neck polar moment of inertia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd32 Bone mineral density QTL 32 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bmd33 Bone mineral density QTL 33 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:49,444,551...81,709,989 JBrowse link
Q Bss13 Bone structure and strength QTL 13 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:60,220,938...105,220,938 JBrowse link
femoral neck width term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss113 Bone structure and strength QTL 113 IDA RGD PMID:26297441 RGD:11528619 NCBI chr 3:16,490,648...19,241,681 JBrowse link
Q Bss120 Bone structure and strength QTL 120 IDA RGD PMID:26297441 RGD:11528619 NCBI chr17:77,830,064...78,603,788 JBrowse link
Q Bss15 Bone structure and strength QTL 15 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:87,327,165...132,327,165 JBrowse link
Q Bss18 Bone structure and strength QTL 18 IDA RGD PMID:16461031 RGD:1578307 NCBI chr10:96,703,043...107,057,807 JBrowse link
femur cross-sectional area term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss22 Bone structure and strength QTL 22 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 1:171,629,477...216,629,477 JBrowse link
Q Bss23 Bone structure and strength QTL 23 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 6:1...42,487,980 JBrowse link
Q Bss24 Bone structure and strength QTL 24 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bss25 Bone structure and strength QTL 25 IDA RGD PMID:18158281 RGD:2293455 NCBI chr10:69,738,412...107,211,142 JBrowse link
Q Bss26 Bone structure and strength QTL 26 IDA RGD PMID:18158281 RGD:2293455 NCBI chr13:65,103,704...106,807,694 JBrowse link
femur head width term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss115 Bone structure and strength QTL 115 IDA RGD PMID:26297441 RGD:11528619 NCBI chr 8:80,802,332...81,664,473 JBrowse link
femur length term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss116 Bone structure and strength QTL 116 IDA RGD PMID:26297441 RGD:11528619 NCBI chr10:44,179,770...45,632,973 JBrowse link
Q Bss121 Bone structure and strength QTL 121 IDA RGD PMID:26297441 RGD:11528619 NCBI chr20:33,221,477...35,747,124 JBrowse link
femur midshaft cortical cross-sectional area term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss111 Bone structure and strength QTL 111 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 2:211,744,537...249,053,267 JBrowse link
Q Bss112 Bone structure and strength QTL 112 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 5:106,906,205...151,906,205 JBrowse link
Q Bss27 Bone structure and strength QTL 27 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 1:171,629,477...216,629,477 JBrowse link
Q Bss28 Bone structure and strength QTL 28 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 6:1...42,487,980 JBrowse link
Q Bss29 Bone structure and strength QTL 29 IDA RGD PMID:18158281 RGD:2293455 NCBI chr15:11,111,142...56,111,142 JBrowse link
Q Bss3 Bone structure and strength QTL 3 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 4:109,827,074...154,827,074 JBrowse link
femur midshaft polar moment of inertia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss105 Bone structure and strength QTL 105 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 4:109,827,074...154,827,074 JBrowse link
Q Bss2 Bone structure and strength QTL 2 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 2:211,744,537...249,053,267 JBrowse link
Q Bss30 Bone structure and strength QTL 30 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 1:171,629,477...216,629,477 JBrowse link
Q Bss31 Bone structure and strength QTL 31 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 6:1...42,487,980 JBrowse link
Q Bss32 Bone structure and strength QTL 32 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bss33 Bone structure and strength QTL 33 IDA RGD PMID:18158281 RGD:2293455 NCBI chr10:69,738,412...107,211,142 JBrowse link
Q Bss34 Bone structure and strength QTL 34 IDA RGD PMID:18158281 RGD:2293455 NCBI chr13:65,103,704...106,807,694 JBrowse link
Q Bss35 Bone structure and strength QTL 35 IDA RGD PMID:18158281 RGD:2293455 NCBI chr18:28,964,853...73,964,853 JBrowse link
Q Bss4 Bone structure and strength QTL 4 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 5:106,906,205...151,906,205 JBrowse link
Q Bss5 Bone structure and strength QTL 5 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 7:24,751,841...69,751,841 JBrowse link
Q Bss7 Bone structure and strength QTL 7 IDA RGD PMID:16059631 RGD:1549683 NCBI chr15:75,788,062...101,769,107 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  clinical measurement 2369
    body morphological measurement 733
      skeleton morphological measurement 201
        bone morphological measurement 179
          femur morphological measurement 43
            femoral neck morphological measurement + 18
            femur area + 36
            femur head morphological measurement + 1
            femur length 2
            femur metaphysis morphological measurement + 0
            femur midshaft morphological measurement + 17
            femur weight 0
Path 2
Term Annotations click to browse term
  clinical measurement 2369
    musculoskeletal system measurement 297
      skeletal system measurement 235
        skeleton morphological measurement 201
          bone morphological measurement 179
            femur morphological measurement 43
              femoral neck morphological measurement + 18
              femur area + 36
              femur head morphological measurement + 1
              femur length 2
              femur metaphysis morphological measurement + 0
              femur midshaft morphological measurement + 17
              femur weight 0
paths to the root