Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:organ non-tumorous lesion measurement
go back to main search page
Accession:CMO:0000860 term browser browse the term
Definition:Measurement of an organ lesion which is not neoplastic in origin. A lesion is a localized pathological change in structure of an organ or tissue due to injury or disease; especially one that is circumscribed and well defined. Examples of non-tumorous lesions would include wounds, sores, ulcers, infarctions, etc.


show annotations for term's descendants           Sort by:
brain infarction volume term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bp49 Blood pressure QTL 49 IDA 16.6 RGD PMID:9241273 RGD:61056 NCBI chr 5:65,089,051...103,648,916 JBrowse link
index of glomerular damage term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Glom10 Glomerulus QTL 10 IDA 3.4 RGD PMID:16720678 RGD:1581737 NCBI chr11:3,818,154...48,818,154 JBrowse link
Q Glom11 Glomerulus QTL 11 IDA 2.9 RGD PMID:16720678 RGD:1581737 NCBI chr18:53,266,671...86,134,022 JBrowse link
Q Glom12 Glomerulus QTL 12 IDA 2.7 RGD PMID:16720678 RGD:1581737 NCBI chr 5:38,011,670...83,011,670 JBrowse link
Q Glom13 Glomerulus QTL 13 IDA 2.2 RGD PMID:16720678 RGD:1581737
Q Glom14 Glomerulus QTL 14 IDA 2.5 RGD PMID:16720678 RGD:1581737 NCBI chr15:40,463,152...85,463,152 JBrowse link
Q Glom17 Glomerulus QTL 17 IDA 0.001 3.9 RGD PMID:18682577 RGD:2312422 NCBI chr 1:175,967,553...200,707,874 JBrowse link
Q Glom18 Glomerulus QTL 18 IDA 0.003 2.4 RGD PMID:18682577 RGD:2312422 NCBI chr 1:194,786,607...262,083,703 JBrowse link
Q Glom19 Glomerulus QTL 19 IDA 0.006 1.9 RGD PMID:18682577 RGD:2312422
Q Glom20 Glomerulus QTL 20 IDA 0.001 3.6 RGD PMID:18682577 RGD:2312422 NCBI chr11:57,754,837...96,071,021 JBrowse link
Q Glom21 Glomerulus QTL 21 IDA 0.005 2.0 RGD PMID:18682577 RGD:2312422 NCBI chr18:5,460,455...42,690,191 JBrowse link
Q Glom9 Glomerulus QTL 9 IDA 3.5 RGD PMID:16720678 RGD:1581737
Q Rends1 Renal damage susceptibility QTL 1 IDA 0.05 RGD PMID:10454439 RGD:632218 NCBI chr 1:139,442,053...223,964,440 JBrowse link
Q Rf57 Renal function QTL 57 IDA 0.0 RGD PMID:19584172 RGD:2316856 NCBI chr 5:64,589,016...93,503,770 JBrowse link
Q Rf58 Renal function QTL 58 IDA 7.8 RGD PMID:19584172 RGD:2316856 NCBI chr 7:49,682,832...115,766,396 JBrowse link
Q Rf9 Renal function QTL 9 IDA 3.28 RGD PMID:14532335 RGD:727992 NCBI chr 2:113,746,222...205,135,428 JBrowse link
kidney crescentic glomeruli count to kidney normal glomeruli count ratio term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Glom27 Glomerulus QTL 27 IDA 3.9 RGD PMID:22445570 RGD:7207870 NCBI chr13:21,120,177...109,350,286 JBrowse link
kidney sclerotic glomeruli count to total glomeruli count ratio term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Glom15 Glomerulus QTL 15 IDA 9.1 RGD PMID:16482158 RGD:2293335 NCBI chr13:67,635,937...109,350,286 JBrowse link
Q Glom16 Glomerulus QTL 16 IDA 7.4 RGD PMID:16482158 RGD:2293335 NCBI chr16:839,086...52,786,090 JBrowse link
Q Glom24 Glomerulus QTL 24 IDA 3.1 RGD PMID:16482158 RGD:2293335 NCBI chr 5:141,764,300...172,190,305 JBrowse link
pancreatic islet damage composite score term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pancm1 Pancreatic morphology QTL 1 IDA 7.1 RGD PMID:9169130 RGD:61083 NCBI chr 1:191,190,115...223,964,326 JBrowse link
percentage of study population developing cerebrovascular lesions during a period of time term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Strs4 Sensitivity to stroke QTL 4 IDA 8.7 RGD PMID:23690346 RGD:7411685 NCBI chr 1:87,558,587...132,558,587 JBrowse link
Q Strs5 Sensitivity to stroke QTL 5 IDA 9.4 RGD PMID:23690346 RGD:7411685 NCBI chr18:52,198,059...68,120,379 JBrowse link
Q Strs6 Sensitivity to stroke QTL 6 IDA 3.9 RGD PMID:23690346 RGD:7411685 NCBI chr 5:140,258,140...143,398,122 JBrowse link
Q Strs7 Sensitivity to stroke QTL 7 IDA 3.8 RGD PMID:23690346 RGD:7411685 NCBI chr15:44,465,447...56,583,797 JBrowse link
post-insult time to onset of cerebrovascular lesion term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Strs1 Sensitivity to stroke QTL 1 IDA 7.4 RGD PMID:8696337 RGD:61093 NCBI chr 1:131,179,947...176,179,947 JBrowse link
Q Strs2 Sensitivity to stroke QTL 2 IDA 4.7 RGD PMID:8696337 RGD:61093 NCBI chr 5:141,212,838...172,190,305 JBrowse link
Q Strs3 Sensitivity to stroke QTL 3 IDA 3.0 RGD PMID:8696337 RGD:61093 NCBI chr 4:41,400,577...86,400,577 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  clinical measurement 2383
    organ measurement 485
      organ lesion measurement 140
        organ non-tumorous lesion measurement 28
          brain non-tumorous lesion measurement + 8
          heart non-tumorous lesion measurement + 0
          infarction measurement + 1
          kidney non-tumorous lesion measurement + 19
          liver non-tumorous lesion measurement + 0
          organ non-tumorous lesion incidence/prevalence measurement + 4
          pancreas non-tumorous lesion measurement + 1
          stomach non-tumorous lesion measurement 0
          testis non-tumorous lesion measurement 0
          tongue non-tumorous lesion measurement 0
paths to the root