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CLINICAL MEASUREMENT - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:serum total cholesterol level
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Accession:CMO:0000363 term browser browse the term
Definition:Measurement of the entire amount of cholesterol, a eukaryotic sterol that in higher animals is the precursor of bile acids and steroid hormones and a key constituent of cell membranes, without taking into account any association with other molecules such as lipoproteins, in a specified volume of serum, the clear liquid that separates from blood after it has clotted completely, i.e. blood plasma from which fibrinogen has been removed.
Synonyms:related_synonym: serum TC level


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serum total cholesterol level term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scl1 Serum cholesterol level QTL 1 IDA 0.001 7.7 RGD PMID:10634822 RGD:61092 NCBI chr15:19,155,762...87,086,765 JBrowse link
Q Scl2 Serum cholesterol level QTL 2 IDA 0.001 7.3 RGD PMID:10634822 RGD:61092 NCBI chr 5:64,589,016...109,589,016 JBrowse link
Q Scl22 Serum cholesterol level QTL 22 IDA 6.2 RGD PMID:9199194 RGD:61055 NCBI chr18:12,216,684...31,644,508 JBrowse link
Q Scl25 Serum cholesterol level QTL 25 IDA 3.013 RGD PMID:11721057 RGD:70849 NCBI chr 1:87,785,026...142,582,336 JBrowse link
Q Scl26 Serum cholesterol level QTL 26 IDA 3.065 RGD PMID:11721057 RGD:70849 NCBI chr 5:48,523,123...91,770,353 JBrowse link
Q Scl29 Serum cholesterol level QTL 29 IDA 3.74 RGD PMID:14724732 RGD:737686
Q Scl3 Serum cholesterol level QTL 3 IDA 3.2 RGD PMID:10634822 RGD:61092 NCBI chr 7:100,548,246...137,014,596 JBrowse link
Q Scl4 Serum cholesterol level QTL 4 IDA 0.008 1.9 RGD PMID:9633608 RGD:619667 NCBI chr 4:96,731,383...141,731,383 JBrowse link
Q Scl44 Serum cholesterol level QTL 44 IDA 6.0 RGD PMID:16061941 RGD:1547851 NCBI chr 5:44,924,861...153,890,773 JBrowse link
Q Scl45 Serum cholesterol level QTL 45 IDA 5.8 RGD PMID:16061941 RGD:1547851 NCBI chr14:65,920,283...99,224,555 JBrowse link
Q Scl46 Serum cholesterol level QTL 46 IDA 3.5 RGD PMID:16061941 RGD:1547851
Q Scl47 Serum cholesterol level QTL 47 IDA 3.6 RGD PMID:16061941 RGD:1547851 NCBI chr10:51,071,897...96,071,897 JBrowse link
Q Scl48 Serum cholesterol level QTL 48 IDA 5.0 RGD PMID:16061941 RGD:1547851 NCBI chr12:15,264,248...52,308,831 JBrowse link
Q Scl5 Serum cholesterol level QTL 5 IDA 2.1 RGD PMID:9633608 RGD:619667
Q Scl59 Serum cholesterol level QTL 59 IDA RGD PMID:18753676 RGD:2300117 NCBI chr14:77,914,838...104,348,525 JBrowse link
Q Scl6 Serum cholesterol level QTL 6 IDA 9.6 RGD PMID:12482837 RGD:629577 NCBI chr 1:81,269,860...99,645,535 JBrowse link
Q Scl60 Serum cholesterol level QTL 60 IDA 3.13 RGD PMID:10720472 RGD:619689
Q Scl62 Serum cholesterol level QTL 62 IDA 0.05 RGD PMID:19584880 RGD:2312642 NCBI chr 3:37,796,919...59,119,581 JBrowse link
Q Scl63 Serum cholesterol level QTL 63 IDA 0.001 RGD PMID:19584880 RGD:2312642
Q Scl64 Serum cholesterol level QTL 64 IDA 0.001 RGD PMID:19584880 RGD:2312642 NCBI chr 5:73,779,642...118,779,642 JBrowse link
Q Scl65 Serum cholesterol level QTL 65 IDA 0.001 RGD PMID:19584880 RGD:2312642
Q Scl7 Serum cholesterol level QTL 7 IDA 4.1 RGD PMID:12482837 RGD:629577 NCBI chr 7:39,845,902...84,845,902 JBrowse link
Q Scl8 Serum cholesterol level QTL8 IDA 4.4 RGD PMID:12482837 RGD:629577
Q Scl9 Serum cholesterol level QTL 9 IDA 3.3 RGD PMID:12482837 RGD:629577 NCBI chr16:15,748,006...25,801,629 JBrowse link

Related Phenotype Data for Term "serum total cholesterol level" (CMO:0000363)

Rat Strains:
Clinical Measurements:
Experimental Conditions:
Measurement Methods:
Term paths to the root
Path 1
Term Annotations click to browse term
  clinical measurement 2383
    blood measurement 443
      blood chemistry measurement 426
        blood protein measurement 188
          blood lipoprotein measurement 70
            blood lipoprotein level 70
              blood total cholesterol level 45
                serum total cholesterol level 24
                  serum high density lipoprotein cholesterol level to serum total cholesterol level ratio 0
paths to the root