Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:serpentine
go back to main search page
Accession:CHEBI:9119 term browser browse the term
Definition:An indole alkaloid that is 18-oxayohimban dehydrogenated at positions 3, 4, 5, 6, 16 and 17 and substituted by a methyl group at the 19alpha position and by a methoxycarbonyl group at position 16.
Synonyms:exact_synonym: methyl (19alpha)-19-methyl-3,4,5,6,16,17-hexadehydro-18-oxayohimban-4-ium-1-ide-16-carboxylate
 related_synonym: (19alpha)-3,4,5,6,16,17-hexadehydro-16-(methoxycarbonyl)-19-methyloxayohimbanium;   (4S,4aR,14aS)-4-methyl-1-[(methyloxy)carbonyl]-4a,5,14,14a-tetrahydro-4H-indolo[2,3-a]pyrano[3,4-g]quinolizin-6-ium-13-ide;   Formula=C21H20N2O3;   InChI=1S/C21H20N2O3/c1-12-16-10-23-8-7-14-13-5-3-4-6-18(13)22-20(14)19(23)9-15(16)17(11-26-12)21(24)25-2/h3-8,11-12,15-16H,9-10H2,1-2H3/t12-,15-,16+/m0/s1;   InChIKey=WYTGDNHDOZPMIW-VBNZEHGJSA-N;   SMILES=[C@]12([C@@H](OC=C([C@]1(CC=3[N+](C2)=CC=C4C5=CC=CC=C5[N-]C34)[H])C(=O)OC)C)[H];   Serpentine (alkaloid);   methyl (19alpha)-19-methyl-3,4,5,6,16,17-hexadehydrooxayohimban-4-ium-1-ide-16-carboxylate
 xref: Beilstein:5421116;   CAS:18786-24-8;   KEGG:C09241;   KNApSAcK:C00001769
 xref_mesh: MESH:C009244
 cyclic_relationship: is_conjugate_base_of CHEBI:142531


show annotations for term's descendants       view all columns           Sort by:
 
serpentine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 JBrowse link 7 123,599,264 123,608,436 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19791
    role 19739
      biological role 19738
        biochemical role 19233
          metabolite 19209
            alkaloid 5318
              indole alkaloid 1833
                serpentine 1
Path 2
Term Annotations click to browse term
  CHEBI ontology 19791
    subatomic particle 19789
      composite particle 19789
        hadron 19789
          baryon 19789
            nucleon 19789
              atomic nucleus 19789
                atom 19789
                  main group element atom 19675
                    main group molecular entity 19675
                      s-block molecular entity 19417
                        hydrogen molecular entity 19408
                          hydrides 18389
                            inorganic hydride 17220
                              pnictogen hydride 17183
                                nitrogen hydride 17018
                                  ammonium 8222
                                    ammonium ion derivative 8217
                                      quaternary ammonium ion 5062
                                        quaternary nitrogen compound 555
                                          iminium betaine 42
                                            serpentine 1
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.