Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:Ro 41-5253
go back to main search page
Accession:CHEBI:90706 term browser browse the term
Definition:A thiochromane that is 3,4-dihydro-2H-1-benzothiopyran S,S-dioxide in which the hydrogens at position 4 are both replaced by methyl groups, the hydrogens at position 7 is replaced by a heptyloxy group, while the hydrogen at position 6 is replaced by a 1-phenylprop-1-en-2-yl group, the phenyl group of which is substituted at the para position by a carboxy group. It is a selective antagonist for retinoic acid receptor alpha.
Synonyms:exact_synonym: 4-{(1E)-2-[7-(heptyloxy)-4,4-dimethyl-1,1-dioxido-3,4-dihydro-2H-1-benzothiopyran-6-yl]prop-1-en-1-yl}benzoic acid
 related_synonym: Formula=C28H36O5S;   InChI=1S/C28H36O5S/c1-5-6-7-8-9-15-33-25-19-26-24(28(3,4)14-16-34(26,31)32)18-23(25)20(2)17-21-10-12-22(13-11-21)27(29)30/h10-13,17-19H,5-9,14-16H2,1-4H3,(H,29,30)/b20-17+;   InChIKey=JEIWQRITHXYGIF-LVZFUZTISA-N;   LG-629;   LG629;   SMILES=S1(=O)(=O)C2=C(C(CC1)(C)C)C=C(\\C(=C\\C3=CC=C(C(=O)O)C=C3)\\C)C(=C2)OCCCCCCC
 xref: CAS:144092-31-9
 xref_mesh: MESH:C084904
 xref: PMID:23102850;   PMID:24495389;   PMID:25896049;   PMID:9724098;   Reaxys:8173393



show annotations for term's descendants           Sort by:
Ro 41-5253 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco1 beta-carotene oxygenase 1 increases expression ISO Ro 41-5253 results in increased expression of BCO1 mRNA; Ro 41-5253 results in increased expression of BCO1 protein CTD PMID:16186334 NCBI chr19:62,058,061...62,094,923
Ensembl chr19:62,058,089...62,094,917
JBrowse link
G Ccnd3 cyclin D3 multiple interactions ISO Ro 41-5253 inhibits the reaction [Tretinoin promotes the reaction [CPG-oligonucleotide results in increased expression of CCND3 protein]] CTD PMID:17209053 NCBI chr 9:20,891,696...20,987,199
Ensembl chr 9:20,891,704...20,987,033
JBrowse link
G Ccne1 cyclin E1 multiple interactions ISO Ro 41-5253 inhibits the reaction [Tretinoin promotes the reaction [Tetradecanoylphorbol Acetate results in increased expression of CCNE1 protein]] CTD PMID:12421932 NCBI chr 1:99,918,672...99,927,986
Ensembl chr 1:99,918,674...99,927,822
JBrowse link
G Cd1d1 CD1d1 molecule multiple interactions ISO Ro 41-5253 inhibits the reaction [Am 580 results in increased expression of CD1D mRNA]; Ro 41-5253 inhibits the reaction [Tretinoin results in increased expression of CD1D mRNA] CTD PMID:17392484 NCBI chr 2:174,721,522...174,725,029
Ensembl chr 2:174,721,522...174,725,029
JBrowse link
G Cdkn1b cyclin-dependent kinase inhibitor 1B multiple interactions ISO Ro 41-5253 inhibits the reaction [Tretinoin promotes the reaction [Tetradecanoylphorbol Acetate results in decreased expression of CDKN1B protein]] CTD PMID:12421932 NCBI chr 4:169,491,273...169,496,500
Ensembl chr 4:169,490,876...169,496,498
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 multiple interactions ISO Ro 41-5253 inhibits the reaction [4-(5,6,7,8-tetrahydro-5,5,8,8-tetramethyl-2-anthracenyl)benzoic acid results in increased expression of CYP26A1 mRNA]; Ro 41-5253 inhibits the reaction [Am 580 results in increased expression of CYP26A1 mRNA] CTD PMID:10953040 NCBI chr 1:244,883,822...244,887,657
Ensembl chr 1:244,883,752...244,887,657
JBrowse link
G Fabp4 fatty acid binding protein 4 increases expression ISO Ro 41-5253 results in increased expression of FABP4 mRNA CTD PMID:17290005 NCBI chr 2:93,488,251...93,492,961
Ensembl chr 2:93,488,271...93,492,972
JBrowse link
G Fth1 ferritin heavy chain 1 multiple interactions EXP Ro 41-5253 inhibits the reaction [Tretinoin results in increased expression of FTH1 mRNA] CTD PMID:22154532 NCBI chr 1:216,052,037...216,054,325
Ensembl chr 1:216,051,998...216,055,214
JBrowse link
G Gja1 gap junction protein, alpha 1 multiple interactions ISO Ro 41-5253 inhibits the reaction [4-(2-(5,6,7,8-tetrahydro-5,5,8,8-tetramethyl-2-naphthalenyl)-1-propenyl)benzoic acid results in increased expression of GJA1 protein]; Ro 41-5253 inhibits the reaction [beta Carotene results in increased expression of GJA1 protein] CTD PMID:16091010 NCBI chr20:36,302,490...36,315,010
Ensembl chr20:36,302,352...36,319,689
JBrowse link
G Ifng interferon gamma multiple interactions ISO Ro 41-5253 inhibits the reaction [IFNG protein promotes the reaction [Tretinoin results in increased expression of MUC4 protein]]; Ro 41-5253 inhibits the reaction [IFNG protein results in increased expression of MUC4 protein]; Ro 41-5253 inhibits the reaction [Tretinoin results in decreased secretion of IFNG protein] CTD PMID:16007204 PMID:16872382 NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:55,761,736...55,793,216
JBrowse link
G Ifngr1 interferon gamma receptor 1 multiple interactions ISO Ro 41-5253 inhibits the reaction [Am 580 results in increased expression of IFNGR1 protein] CTD PMID:16085646 NCBI chr 1:16,152,811...16,171,439
Ensembl chr 1:16,152,879...16,171,437
JBrowse link
G Il10 interleukin 10 multiple interactions ISO Ro 41-5253 inhibits the reaction [Tretinoin results in increased secretion of IL10 protein] CTD PMID:16872382 NCBI chr13:45,024,921...45,029,586
Ensembl chr13:45,025,087...45,029,580
JBrowse link
G Il12a interleukin 12A multiple interactions ISO Ro 41-5253 inhibits the reaction [Tretinoin results in decreased secretion of [IL12A protein binds to IL12B protein]] CTD PMID:16872382 NCBI chr 2:155,275,734...155,282,997
Ensembl chr 2:155,275,625...155,282,997
JBrowse link
G Il12b interleukin 12B multiple interactions ISO Ro 41-5253 inhibits the reaction [Tretinoin results in decreased secretion of [IL12A protein binds to IL12B protein]] CTD PMID:16872382 NCBI chr10:29,390,300...29,405,194
Ensembl chr10:29,389,905...29,405,194
JBrowse link
G Il4 interleukin 4 multiple interactions ISO Ro 41-5253 inhibits the reaction [Tretinoin results in increased secretion of IL4 protein] CTD PMID:16872382 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:38,272,003...38,277,549
JBrowse link
G Ins2 insulin 2 multiple interactions ISO [Dexamethasone co-treated with INS protein co-treated with Ro 41-5253] results in increased expression of PPARG protein CTD PMID:17290005 NCBI chr 1:207,272,738...207,421,998
Ensembl chr 1:207,272,742...207,273,805
JBrowse link
G Ireb2 iron responsive element binding protein 2 multiple interactions EXP Ro 41-5253 inhibits the reaction [Tretinoin results in decreased expression of IREB2 mRNA] CTD PMID:22154532 NCBI chr 8:64,124,152...64,207,702
Ensembl chr 8:64,154,945...64,205,520
JBrowse link
G Irf1 interferon regulatory factor 1 multiple interactions ISO Ro 41-5253 inhibits the reaction [Am 580 results in increased expression of IRF1 protein]; Ro 41-5253 inhibits the reaction [Tretinoin results in increased expression of IRF1 protein] CTD PMID:16085646 PMID:16636311 NCBI chr10:38,417,935...38,424,946
Ensembl chr10:38,417,148...38,424,947
JBrowse link
G Muc4 mucin 4, cell surface associated multiple interactions ISO Ro 41-5253 inhibits the reaction [IFNG protein promotes the reaction [Tretinoin results in increased expression of MUC4 protein]]; Ro 41-5253 inhibits the reaction [IFNG protein results in increased expression of MUC4 protein]; Ro 41-5253 inhibits the reaction [Tretinoin results in increased expression of MUC4 protein] CTD PMID:16007204 NCBI chr11:81,513,321...81,575,200 JBrowse link
G Nfatc1 nuclear factor of activated T-cells 1 multiple interactions ISO Ro 41-5253 inhibits the reaction [Tretinoin inhibits the reaction [TNFSF11 protein results in increased expression of NFATC1 protein]]; Ro 41-5253 inhibits the reaction [tributyltin inhibits the reaction [TNFSF11 protein results in increased expression of NFATC1 protein]] CTD PMID:17291456 NCBI chr18:76,321,386...76,430,997
Ensembl chr18:76,321,386...76,430,990
JBrowse link
G Oas2 2'-5' oligoadenylate synthetase 2 multiple interactions ISO Ro 41-5253 inhibits the reaction [Am 580 results in increased expression of OAS2 mRNA]; Ro 41-5253 inhibits the reaction [Tretinoin results in increased expression of OAS2 mRNA] CTD PMID:16636311 NCBI chr12:41,464,568...41,492,036
Ensembl chr12:41,467,315...41,495,881
JBrowse link
G Plat plasminogen activator, tissue type multiple interactions ISO Ro 41-5253 inhibits the reaction [Retinoids results in increased expression of PLAT] CTD PMID:7556191 NCBI chr16:75,943,061...76,022,037
Ensembl chr16:75,943,064...75,967,696
JBrowse link
G Ppard peroxisome proliferator-activated receptor delta affects binding
multiple interactions
ISO Ro 41-5253 binds to PPARD protein
Ro 41-5253 inhibits the reaction [GW 2433 binds to PPARD protein]
CTD PMID:17290005 NCBI chr20:6,300,527...6,365,707
Ensembl chr20:6,352,183...6,365,707
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma multiple interactions ISO [Dexamethasone co-treated with INS protein co-treated with Ro 41-5253] results in increased expression of PPARG protein; Ro 41-5253 binds to and results in increased activity of PPARG protein; Ro 41-5253 inhibits the reaction [pioglitazone results in increased activity of PPARG protein]; Ro 41-5253 inhibits the reaction [rosiglitazone binds to PPARG protein]
[Dexamethasone co-treated with INS protein co-treated with Ro 41-5253] results in increased expression of PPARG protein; Ro 41-5253 results in increased activity of and results in decreased expression of PPARG protein
CTD PMID:17290005 NCBI chr 4:150,095,743...150,221,104
Ensembl chr 4:150,095,787...150,221,104
JBrowse link
G Rara retinoic acid receptor, alpha multiple interactions
increases response to substance
decreases activity
ISO Am 580 inhibits the reaction [Ro 41-5253 results in decreased activity of RARA protein]; Ro 41-5253 binds to and results in decreased activity of RARA protein; Ro 41-5253 inhibits the reaction [[RARA protein co-treated with RXRA protein] results in increased expression of SLC10A1 mRNA]; Ro 41-5253 inhibits the reaction [Tretinoin results in increased expression of RARA mRNA]
RARA protein results in increased susceptibility to Ro 41-5253
CTD PMID:7556191 PMID:8838863 PMID:10779427 PMID:17216566 PMID:17290005 More... NCBI chr10:84,379,780...84,424,371
Ensembl chr10:84,389,622...84,425,160
JBrowse link
G Rarb retinoic acid receptor, beta multiple interactions ISO Ro 41-5253 inhibits the reaction [[RARB protein co-treated with RXRA protein] results in increased expression of SLC10A1 mRNA] CTD PMID:25550158 NCBI chr15:10,837,252...11,482,037
Ensembl chr15:11,131,358...11,482,040
JBrowse link
G Rarg retinoic acid receptor, gamma multiple interactions ISO Ro 41-5253 inhibits the reaction [[RARG protein co-treated with RXRA protein] results in increased expression of SLC10A1 mRNA] CTD PMID:25550158 NCBI chr 7:135,246,427...135,268,889
Ensembl chr 7:135,246,427...135,268,889
JBrowse link
G Rb1 RB transcriptional corepressor 1 multiple interactions ISO Ro 41-5253 inhibits the reaction [Tretinoin promotes the reaction [Tetradecanoylphorbol Acetate results in increased phosphorylation of RB1 protein]] CTD PMID:12421932 NCBI chr15:54,780,858...54,911,989
Ensembl chr15:54,780,858...54,911,857
JBrowse link
G Rxra retinoid X receptor alpha multiple interactions ISO Ro 41-5253 inhibits the reaction [[RARA protein co-treated with RXRA protein] results in increased expression of SLC10A1 mRNA]; Ro 41-5253 inhibits the reaction [[RARB protein co-treated with RXRA protein] results in increased expression of SLC10A1 mRNA]; Ro 41-5253 inhibits the reaction [[RARG protein co-treated with RXRA protein] results in increased expression of SLC10A1 mRNA] CTD PMID:25550158 NCBI chr 3:31,387,892...31,474,415
Ensembl chr 3:31,388,223...31,474,417
JBrowse link
G Slc10a1 solute carrier family 10 member 1 multiple interactions
decreases expression
increases response to substance
ISO Ro 41-5253 inhibits the reaction [[RARA protein co-treated with RXRA protein] results in increased expression of SLC10A1 mRNA]; Ro 41-5253 inhibits the reaction [[RARB protein co-treated with RXRA protein] results in increased expression of SLC10A1 mRNA]; Ro 41-5253 inhibits the reaction [[RARG protein co-treated with RXRA protein] results in increased expression of SLC10A1 mRNA]
Ro 41-5253 results in decreased expression of SLC10A1 mRNA; Ro 41-5253 results in decreased expression of SLC10A1 protein
SLC10A1 protein results in increased susceptibility to Ro 41-5253
CTD PMID:25550158 NCBI chr 6:106,344,319...106,357,944
Ensembl chr 6:106,344,319...106,357,944
JBrowse link
G Stat1 signal transducer and activator of transcription 1 multiple interactions
decreases expression
ISO Ro 41-5253 inhibits the reaction [Am 580 results in increased phosphorylation of and results in increased activity of STAT1 protein]; Ro 41-5253 inhibits the reaction [Tretinoin results in increased phosphorylation of and results in increased activity of STAT1 protein]
Ro 41-5253 results in decreased expression of STAT1 protein
CTD PMID:16007204 PMID:16085646 NCBI chr 9:56,911,522...56,951,926
Ensembl chr 9:56,911,523...57,077,346
JBrowse link
G Tfrc transferrin receptor multiple interactions EXP Ro 41-5253 inhibits the reaction [Tretinoin results in decreased expression of TFRC mRNA] CTD PMID:22154532 NCBI chr11:81,668,478...81,690,318
Ensembl chr11:81,668,478...81,690,318
JBrowse link
G Tnfsf11 TNF superfamily member 11 multiple interactions ISO Ro 41-5253 inhibits the reaction [Tretinoin inhibits the reaction [TNFSF11 protein results in increased expression of NFATC1 protein]]; Ro 41-5253 inhibits the reaction [tributyltin inhibits the reaction [TNFSF11 protein results in increased expression of NFATC1 protein]] CTD PMID:17291456 NCBI chr15:60,083,008...60,114,479
Ensembl chr15:60,083,008...60,114,479
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 20862
    role 20820
      biological role 20818
        biochemical role 20264
          apoptosis inducer 13731
            Ro 41-5253 33
Path 2
Term Annotations click to browse term
  CHEBI ontology 20862
    subatomic particle 20860
      composite particle 20860
        hadron 20860
          baryon 20860
            nucleon 20860
              atomic nucleus 20860
                atom 20860
                  main group element atom 20781
                    p-block element atom 20781
                      carbon group element atom 20715
                        carbon atom 20710
                          organic molecular entity 20710
                            heteroorganic entity 20219
                              organochalcogen compound 19904
                                organooxygen compound 19806
                                  carbon oxoacid 19155
                                    carboxylic acid 19152
                                      aromatic carboxylic acid 14051
                                        benzoic acids 14017
                                          Ro 41-5253 33
paths to the root