Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:rhodamine 123
go back to main search page
Accession:CHEBI:8828 term browser browse the term
Definition:A xanthene dye that has formula C21H17ClN2O3.
Synonyms:exact_synonym: 6-amino-9-[2-(methoxycarbonyl)phenyl]-3H-xanthen-3-iminium chloride
 related_synonym: Formula=C21H17ClN2O3;   InChI=1S/C21H16N2O3.ClH/c1-25-21(24)15-5-3-2-4-14(15)20-16-8-6-12(22)10-18(16)26-19-11-13(23)7-9-17(19)20;/h2-11,22H,23H2,1H3;1H;   InChIKey=MYFATKRONKHHQL-UHFFFAOYSA-N;   RH 123;   SMILES=[Cl-].COC(=O)c1ccccc1-c1c2ccc(N)cc2oc2cc(=[NH2+])ccc12;   rhodamine 110 methyl ester
 xref: Beilstein:6030951;   CAS:62669-70-9;   KEGG:C11190
 xref_mesh: MESH:D020112


show annotations for term's descendants           Sort by:
 
rhodamine 123 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP-binding cassette, sub-family B (MDR/TAP), member 1A multiple interactions
increases export
ISO 5-oxo-hexahydroquinoline analog inhibits the reaction [ABCB1 protein results in increased export of Rhodamine 123]; abemaciclib inhibits the reaction [ABCB1 protein results in increased export of Rhodamine 123]; CEP 33779 inhibits the reaction [ABCB1 protein results in increased export of Rhodamine 123]; Verapamil inhibits the reaction [ABCB1 protein results in increased export of Rhodamine 123] CTD PMID:25058526 PMID:27816545 PMID:30391378 NCBI chr 5:8,567,091...8,748,575
Ensembl chr 5:8,660,077...8,748,575
JBrowse link
G Abcg2 ATP binding cassette subfamily G member 2 (Junior blood group) increases export
multiple interactions
ISO ABCG2 protein results in increased export of Rhodamine 123
abemaciclib inhibits the reaction [ABCG2 protein results in increased export of Rhodamine 123]
CTD PMID:27816545 NCBI chr 6:58,584,491...58,692,451
Ensembl chr 6:58,584,523...58,695,676
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 21530
    role 21508
      application 20992
        dye 1297
          xanthene dye 81
            rhodamine 123 2
Path 2
Term Annotations click to browse term
  CHEBI ontology 21530
    subatomic particle 21516
      composite particle 21516
        hadron 21516
          baryon 21516
            nucleon 21516
              atomic nucleus 21516
                atom 21516
                  main group element atom 21417
                    p-block element atom 21417
                      carbon group element atom 21203
                        carbon atom 21103
                          organic molecular entity 21103
                            organic molecule 20994
                              organic cyclic compound 20548
                                organic heterocyclic compound 19375
                                  oxacycle 17526
                                    dibenzopyran 239
                                      xanthenes 236
                                        xanthene dye 81
                                          rhodamine 123(1+) 2
                                            rhodamine 123 2
paths to the root