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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:rhodamine 123
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Accession:CHEBI:8828 term browser browse the term
Definition:A xanthene dye that has formula C21H17ClN2O3.
Synonyms:exact_synonym: 6-amino-9-[2-(methoxycarbonyl)phenyl]-3H-xanthen-3-iminium chloride
 related_synonym: Formula=C21H17ClN2O3;   InChI=1S/C21H16N2O3.ClH/c1-25-21(24)15-5-3-2-4-14(15)20-16-8-6-12(22)10-18(16)26-19-11-13(23)7-9-17(19)20;/h2-11,22H,23H2,1H3;1H;   InChIKey=MYFATKRONKHHQL-UHFFFAOYSA-N;   RH 123;   SMILES=[Cl-].COC(=O)c1ccccc1-c1c2ccc(N)cc2oc2cc(=[NH2+])ccc12;   rhodamine 110 methyl ester
 xref: Beilstein:6030951;   CAS:62669-70-9;   KEGG:C11190
 xref_mesh: MESH:D020112


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rhodamine 123 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB1 ATP binding cassette subfamily B member 1 increases export EXP ABCB1 protein results in increased export of Rhodamine 123 CTD PMID:28093773 NCBI chr14:13,644,891...13,852,829
Ensembl chr14:13,542,647...13,742,727
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Path 1
Term Annotations click to browse term
  CHEBI ontology 221
    role 221
      application 189
        dye 6
          xanthene dye 2
            rhodamine 123 1
Path 2
Term Annotations click to browse term
  CHEBI ontology 221
    subatomic particle 221
      composite particle 221
        hadron 221
          baryon 221
            nucleon 221
              atomic nucleus 221
                atom 221
                  main group element atom 214
                    p-block element atom 214
                      carbon group element atom 203
                        carbon atom 202
                          organic molecular entity 202
                            organic molecule 197
                              organic cyclic compound 181
                                organic heterocyclic compound 138
                                  oxacycle 52
                                    dibenzopyran 2
                                      xanthenes 2
                                        xanthene dye 2
                                          rhodamine 123(1+) 1
                                            rhodamine 123 1
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.