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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:tetramethylrhodamine ethyl ester perchlorate
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Accession:CHEBI:78720 term browser browse the term
Definition:An organic perchlorate salt that has tetramethylrhodamine ethyl ester(1+) as the cation. It is used as a cell-permeant, cationic, red-orange fluorescent dye that is readily sequestered by active mitochondria.
Synonyms:related_synonym: Formula=C26H27ClN2O7;   InChI=1S/C26H27N2O3.ClHO4/c1-6-30-26(29)20-10-8-7-9-19(20)25-21-13-11-17(27(2)3)15-23(21)31-24-16-18(28(4)5)12-14-22(24)25;2-1(3,4)5/h7-16H,6H2,1-5H3;(H,2,3,4,5)/q+1;/p-1;   InChIKey=NBAOBNBFGNQAEJ-UHFFFAOYSA-M;   SMILES=[O-][Cl](=O)(=O)=O.CCOC(=O)c1ccccc1-c1c2ccc(cc2oc2cc(ccc12)=[N+](C)C)N(C)C;   TMRE perchlorate
 xref: PMID:16256133;   PMID:61256133;   Reaxys:8180460


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Path 1
Term Annotations click to browse term
  CHEBI ontology 19787
    role 19734
      application 19393
        reagent 17168
          tetramethylrhodamine ethyl ester perchlorate 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19787
    subatomic particle 19784
      composite particle 19784
        hadron 19784
          baryon 19784
            nucleon 19784
              atomic nucleus 19784
                atom 19784
                  main group element atom 19672
                    p-block element atom 19672
                      carbon group element atom 19574
                        carbon atom 19563
                          organic molecular entity 19563
                            organic molecule 19488
                              organic cyclic compound 19285
                                organic heterocyclic compound 18410
                                  oxacycle 17185
                                    dibenzopyran 231
                                      xanthenes 228
                                        xanthene dye 77
                                          tetramethylrhodamine 0
                                            tetramethylrhodamine ethyl ester(1+) 0
                                              tetramethylrhodamine ethyl ester perchlorate 0
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