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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:tetramethylrhodamine ethyl ester perchlorate
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Accession:CHEBI:78720 term browser browse the term
Definition:An organic perchlorate salt that has tetramethylrhodamine ethyl ester(1+) as the cation. It is used as a cell-permeant, cationic, red-orange fluorescent dye that is readily sequestered by active mitochondria.
Synonyms:related_synonym: Formula=C26H27ClN2O7;   InChI=1S/C26H27N2O3.ClHO4/c1-6-30-26(29)20-10-8-7-9-19(20)25-21-13-11-17(27(2)3)15-23(21)31-24-16-18(28(4)5)12-14-22(24)25;2-1(3,4)5/h7-16H,6H2,1-5H3;(H,2,3,4,5)/q+1;/p-1;   InChIKey=NBAOBNBFGNQAEJ-UHFFFAOYSA-M;   SMILES=[O-][Cl](=O)(=O)=O.CCOC(=O)c1ccccc1-c1c2ccc(cc2oc2cc(ccc12)=[N+](C)C)N(C)C;   TMRE perchlorate
 xref: PMID:16256133;   PMID:61256133;   Reaxys:8180460


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  CHEBI ontology 860
    role 838
      application 475
        reagent 242
          tetramethylrhodamine ethyl ester perchlorate 0
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  CHEBI ontology 860
    subatomic particle 845
      composite particle 845
        hadron 845
          baryon 845
            nucleon 845
              atomic nucleus 845
                atom 845
                  main group element atom 834
                    p-block element atom 831
                      carbon group element atom 805
                        carbon atom 804
                          organic molecular entity 804
                            organic molecule 723
                              organic cyclic compound 636
                                organic heterocyclic compound 354
                                  oxacycle 252
                                    dibenzopyran 1
                                      xanthenes 1
                                        xanthene dye 0
                                          tetramethylrhodamine 0
                                            tetramethylrhodamine ethyl ester(1+) 0
                                              tetramethylrhodamine ethyl ester perchlorate 0
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