Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:tetramethylrhodamine ethyl ester perchlorate
go back to main search page
Accession:CHEBI:78720 term browser browse the term
Definition:An organic perchlorate salt that has tetramethylrhodamine ethyl ester(1+) as the cation. It is used as a cell-permeant, cationic, red-orange fluorescent dye that is readily sequestered by active mitochondria.
Synonyms:related_synonym: Formula=C26H27ClN2O7;   InChI=1S/C26H27N2O3.ClHO4/c1-6-30-26(29)20-10-8-7-9-19(20)25-21-13-11-17(27(2)3)15-23(21)31-24-16-18(28(4)5)12-14-22(24)25;2-1(3,4)5/h7-16H,6H2,1-5H3;(H,2,3,4,5)/q+1;/p-1;   InChIKey=NBAOBNBFGNQAEJ-UHFFFAOYSA-M;   SMILES=[O-][Cl](=O)(=O)=O.CCOC(=O)c1ccccc1-c1c2ccc(cc2oc2cc(ccc12)=[N+](C)C)N(C)C;   TMRE perchlorate
 xref: PMID:16256133;   PMID:61256133;   Reaxys:8180460


show annotations for term's descendants           Sort by:
 

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 21475
    role 21452
      application 20933
        reagent 18026
          tetramethylrhodamine ethyl ester perchlorate 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 21475
    subatomic particle 21460
      composite particle 21460
        hadron 21460
          baryon 21460
            nucleon 21460
              atomic nucleus 21460
                atom 21460
                  main group element atom 21361
                    p-block element atom 21361
                      carbon group element atom 21148
                        carbon atom 21046
                          organic molecular entity 21046
                            organic molecule 20936
                              organic cyclic compound 20495
                                organic heterocyclic compound 19334
                                  oxacycle 17494
                                    dibenzopyran 237
                                      xanthenes 234
                                        xanthene dye 80
                                          tetramethylrhodamine 0
                                            tetramethylrhodamine ethyl ester(1+) 0
                                              tetramethylrhodamine ethyl ester perchlorate 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.