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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:tetramethylrhodamine ethyl ester perchlorate
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Accession:CHEBI:78720 term browser browse the term
Definition:An organic perchlorate salt that has tetramethylrhodamine ethyl ester(1+) as the cation. It is used as a cell-permeant, cationic, red-orange fluorescent dye that is readily sequestered by active mitochondria.
Synonyms:related_synonym: Formula=C26H27ClN2O7;   InChI=1S/C26H27N2O3.ClHO4/c1-6-30-26(29)20-10-8-7-9-19(20)25-21-13-11-17(27(2)3)15-23(21)31-24-16-18(28(4)5)12-14-22(24)25;2-1(3,4)5/h7-16H,6H2,1-5H3;(H,2,3,4,5)/q+1;/p-1;   InChIKey=NBAOBNBFGNQAEJ-UHFFFAOYSA-M;   SMILES=[O-][Cl](=O)(=O)=O.CCOC(=O)c1ccccc1-c1c2ccc(cc2oc2cc(ccc12)=[N+](C)C)N(C)C;   TMRE perchlorate
 xref: PMID:16256133;   PMID:61256133;   Reaxys:8180460


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Term Annotations click to browse term
  CHEBI ontology 24359
    role 24266
      application 23758
        reagent 19249
          tetramethylrhodamine ethyl ester perchlorate 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 24359
    subatomic particle 24315
      composite particle 24315
        hadron 24315
          baryon 24315
            nucleon 24315
              atomic nucleus 24315
                atom 24315
                  main group element atom 24160
                    p-block element atom 24160
                      carbon group element atom 23936
                        carbon atom 23892
                          organic molecular entity 23892
                            organic molecule 23769
                              organic cyclic compound 23036
                                organic heterocyclic compound 21142
                                  oxacycle 19215
                                    dibenzopyran 240
                                      xanthenes 237
                                        xanthene dye 85
                                          tetramethylrhodamine 0
                                            tetramethylrhodamine ethyl ester(1+) 0
                                              tetramethylrhodamine ethyl ester perchlorate 0
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