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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:tetramethylrhodamine ethyl ester perchlorate
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Accession:CHEBI:78720 term browser browse the term
Definition:An organic perchlorate salt that has tetramethylrhodamine ethyl ester(1+) as the cation. It is used as a cell-permeant, cationic, red-orange fluorescent dye that is readily sequestered by active mitochondria.
Synonyms:related_synonym: Formula=C26H27ClN2O7;   InChI=1S/C26H27N2O3.ClHO4/c1-6-30-26(29)20-10-8-7-9-19(20)25-21-13-11-17(27(2)3)15-23(21)31-24-16-18(28(4)5)12-14-22(24)25;2-1(3,4)5/h7-16H,6H2,1-5H3;(H,2,3,4,5)/q+1;/p-1;   InChIKey=NBAOBNBFGNQAEJ-UHFFFAOYSA-M;   SMILES=[O-][Cl](=O)(=O)=O.CCOC(=O)c1ccccc1-c1c2ccc(cc2oc2cc(ccc12)=[N+](C)C)N(C)C;   TMRE perchlorate
 xref: PMID:16256133;   PMID:61256133;   Reaxys:8180460


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  CHEBI ontology 19811
    role 19818
      application 19630
        reagent 18013
          tetramethylrhodamine ethyl ester perchlorate 0
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  CHEBI ontology 19811
    subatomic particle 19809
      composite particle 19809
        hadron 19840
          baryon 19809
            nucleon 19809
              atomic nucleus 19809
                atom 19809
                  main group element atom 19759
                    p-block element atom 19759
                      carbon group element atom 19708
                        carbon atom 19734
                          organic molecular entity 19705
                            organic molecule 19658
                              organic cyclic compound 19471
                                organic heterocyclic compound 18862
                                  oxacycle 17819
                                    dibenzopyran 280
                                      xanthenes 274
                                        xanthene dye 88
                                          tetramethylrhodamine 0
                                            tetramethylrhodamine ethyl ester(1+) 0
                                              tetramethylrhodamine ethyl ester perchlorate 0
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