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ONTOLOGY REPORT - ANNOTATIONS


Term:9-cis-retinal
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Accession:CHEBI:78273 term browser browse the term
Definition:A retinal in which the double bond at position 9 has cis configuration, whilst the remaining acyclic double bonds have trans configuration.
Synonyms:related_synonym: (2E,4E,6Z,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)nona-2,4,6,8-tetraenal;   (9cis)-retinal;   9-C-retinal;   9-cis-3,7-dimethyl-9-(2,6,6-trimethyl-1-cyclohexen-1-yl)-2,4,6,8-nonatetraenal;   9-cis-7,11,13-trans-retinal;   9-cis-retinaldehyde;   9-cis-vitamin A aldehyde;   Formula=C20H28O;   InChI=1S/C20H28O/c1-16(8-6-9-17(2)13-15-21)11-12-19-18(3)10-7-14-20(19,4)5/h6,8-9,11-13,15H,7,10,14H2,1-5H3/b9-6+,12-11+,16-8-,17-13+;   InChIKey=NCYCYZXNIZJOKI-MKOSUFFBSA-N;   SMILES=C/C(/C=C/C=C(/C)\\C=C\\C1=C(C)CCCC1(C)C)=C\\C=O;   isoretinene A
 xref: CAS:514-85-2;   HMDB:HMDB0006218;   KEGG:C16681;   LIPID_MAPS_instance:LMPR01090017
 xref_mesh: MESH:C031390
 xref: MetaCyc:CPD-13536;   PMID:10064560;   PMID:10389637;   PMID:11882655;   PMID:17003450;   PMID:20837787;   PMID:22090313;   PMID:4750425;   Reaxys:1914180


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9-cis-retinal term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide JBrowse link 4 99,304,971 99,321,401 RGD:6480464
G AKR1B10 aldo-keto reductase family 1 member B10 JBrowse link 7 134,527,567 134,541,412 RGD:6480464
G AKR1C1 aldo-keto reductase family 1 member C1 JBrowse link 10 4,963,415 4,983,283 RGD:6480464
G AKR1C3 aldo-keto reductase family 1 member C3 JBrowse link 10 5,048,766 5,107,686 RGD:6480464
G AKR1C4 aldo-keto reductase family 1 member C4 JBrowse link 10 5,196,837 5,218,949 RGD:6480464
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 JBrowse link 9 72,900,671 72,953,053 RGD:6480464
G CYP3A4 cytochrome P450 family 3 subfamily A member 4 JBrowse link 7 99,756,967 99,784,184 RGD:6480464
G MITF melanocyte inducing transcription factor JBrowse link 3 69,739,464 69,968,332 RGD:6480464
G NR1I2 nuclear receptor subfamily 1 group I member 2 JBrowse link 3 119,780,484 119,818,485 RGD:6480464
G NR1I3 nuclear receptor subfamily 1 group I member 3 JBrowse link 1 161,229,666 161,238,623 RGD:6480464
G RXRA retinoid X receptor alpha JBrowse link 9 134,326,455 134,440,586 RGD:6480464
G TYR tyrosinase JBrowse link 11 89,177,565 89,295,759 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 23949
    role 23837
      application 23245
        solvent 17892
          formic acid 8823
            formyl group 8790
              aldehyde 8790
                retinals 42
                  retinal 42
                    9-cis-retinal 12
Path 2
Term Annotations click to browse term
  CHEBI ontology 23949
    subatomic particle 23900
      composite particle 23900
        hadron 23900
          baryon 23900
            nucleon 23900
              atomic nucleus 23900
                atom 23900
                  main group element atom 23720
                    p-block element atom 23720
                      carbon group element atom 23436
                        carbon atom 23391
                          organic molecular entity 23391
                            organic group 22055
                              organic divalent group 22029
                                organodiyl group 22029
                                  carbonyl group 22004
                                    carbonyl compound 22004
                                      carboxylic acid 21056
                                        carboacyl group 19094
                                          univalent carboacyl group 19094
                                            formyl group 8790
                                              aldehyde 8790
                                                alpha,beta-unsaturated aldehyde 1352
                                                  enal 1352
                                                    retinal 42
                                                      9-cis-retinal 12
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.