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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:ginsenoside F2
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Accession:CHEBI:77145 term browser browse the term
Definition:A ginsenoside found in Panax species that is dammarane which is substituted by hydroxy groups at the 3beta, 12beta and 20 pro-S positions, in which the hydroxy groups at positions 3 and 20 have been converted to the corresponding beta-D-glucopyranosides, and in which a double bond has been introduced at the 24-25 position.
Synonyms:exact_synonym: (3beta,12beta)-20-(beta-D-glucopyranosyloxy)-12-hydroxydammar-24-en-3-yl beta-D-glucopyranoside
 related_synonym: (20S)-ginsenoside F2;   3beta,20-bis(beta-D-glucopyranosyloxy)dammar-24-en-12beta-ol;   Formula=C42H72O13;   InChI=1S/C42H72O13/c1-21(2)10-9-14-42(8,55-37-35(51)33(49)31(47)25(20-44)53-37)22-11-16-41(7)29(22)23(45)18-27-39(5)15-13-28(38(3,4)26(39)12-17-40(27,41)6)54-36-34(50)32(48)30(46)24(19-43)52-36/h10,22-37,43-51H,9,11-20H2,1-8H3/t22-,23+,24+,25+,26-,27+,28-,29-,30+,31+,32-,33-,34+,35+,36-,37-,39-,40+,41+,42-/m0/s1;   InChIKey=SWIROVJVGRGSPO-JBVRGBGGSA-N;   SMILES=CC(C)=CCC[C@](C)(O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)[C@H]1CC[C@]2(C)[C@@H]1[C@H](O)C[C@@H]1[C@@]3(C)CC[C@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)C(C)(C)[C@@H]3CC[C@@]21C
 xref: CAS:62025-49-4;   HMDB:HMDB0039545
 xref_mesh: MESH:C407883
 xref: MetaCyc:CPD-12100;   PMID:16788737;   PMID:18167439;   PMID:20382795;   PMID:22326284;   PMID:22521132;   PMID:23271644;   PMID:23600156;   PMID:23717079;   PMID:23717108;   PMID:24252332;   PMID:24267405;   PMID:24281186;   PMID:24475050;   Patent:KR20090061107;   Reaxys:5720814



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ginsenoside F2 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP binding cassette subfamily B member 1A multiple interactions ISO ginsenoside F2 analog inhibits the reaction [ABCB1 protein results in increased transport of Digoxin] CTD PMID:24380838 NCBI chr 4:25,357,467...25,529,941
Ensembl chr 4:25,158,362...25,442,709
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  CHEBI ontology 19848
    role 19824
      biological role 19822
        biochemical role 19533
          apoptosis inducer 13649
            ginsenoside F2 1
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  CHEBI ontology 19848
    subatomic particle 19846
      composite particle 19846
        hadron 19846
          baryon 19846
            nucleon 19846
              atomic nucleus 19846
                atom 19846
                  main group element atom 19796
                    p-block element atom 19796
                      carbon group element atom 19741
                        carbon atom 19737
                          organic molecular entity 19737
                            heteroorganic entity 19495
                              organochalcogen compound 19257
                                organooxygen compound 19175
                                  carbohydrates and carbohydrate derivatives 15284
                                    carbohydrate 15284
                                      monosaccharide 4806
                                        aldose 3224
                                          aldohexose 2876
                                            glucose 2830
                                              D-glucose 2828
                                                D-glucopyranose 1809
                                                  beta-D-glucose 1659
                                                    beta-D-glucoside 1465
                                                      ginsenoside F2 1
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