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ONTOLOGY REPORT - ANNOTATIONS


Term:5-(hydroxymethyl)cytosine
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Accession:CHEBI:76792 term browser browse the term
Definition:A nucleobase analogue that is cytosine in which the hydrogen at position 5 is replaced by a hydroxymethyl group.
Synonyms:exact_synonym: 4-amino-5-(hydroxymethyl)pyrimidin-2(1H)-one
 related_synonym: 4-Amino-5-(hydroxymethyl)-2(1H)-pyrimidinone;   5-hydroxymethylcytosine;   Formula=C5H7N3O2;   InChI=1S/C5H7N3O2/c6-4-3(2-9)1-7-5(10)8-4/h1,9H,2H2,(H3,6,7,8,10);   InChIKey=RYVNIFSIEDRLSJ-UHFFFAOYSA-N;   SMILES=Nc1nc(=O)[nH]cc1CO
 xref: CAS:1123-95-1
 xref_mesh: MESH:C011865
 xref: MetaCyc:CPD-15531;   PMID:19372391;   PMID:21151123;   PMID:21778364;   PMID:24162071;   PMID:24162993;   PMID:24295785;   PMID:24315686;   PMID:24390216;   PMID:24400731;   PMID:26715454;   PMID:26753520;   PMID:26851753;   PMID:27001475;   Reaxys:125478;   Wikipedia:5-Hydroxymethylcytosine


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5-(hydroxymethyl)cytosine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:6480464
G Cmahp cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene JBrowse link 17 42,567,472 42,640,221 RGD:6480464
G Ftl1 ferritin light chain 1 JBrowse link 1 101,448,190 101,450,034 RGD:6480464
G Gnas GNAS complex locus JBrowse link 3 172,374,957 172,434,988 RGD:6480464
G Grb10 growth factor receptor bound protein 10 JBrowse link 14 92,021,851 92,122,249 RGD:6480464
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 JBrowse link 1 141,874,354 141,893,674 RGD:6480464
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 JBrowse link 1 216,293,087 216,630,339 RGD:6480464
G Klf14 Kruppel-like factor 14 JBrowse link 4 58,247,876 58,250,798 RGD:6480464
G Pde10a phosphodiesterase 10A JBrowse link 1 52,360,296 52,544,448 RGD:6480464
G Pde4d phosphodiesterase 4D JBrowse link 2 40,219,999 41,468,551 RGD:6480464
G Plagl1 PLAG1 like zinc finger 1 JBrowse link 1 7,219,587 7,270,169 RGD:6480464
G Ppp1r9a protein phosphatase 1, regulatory subunit 9A JBrowse link 4 29,976,485 30,247,371 RGD:6480464
G Tet1 tet methylcytosine dioxygenase 1 JBrowse link 20 27,359,122 27,438,039 RGD:6480464
G Tet2 tet methylcytosine dioxygenase 2 JBrowse link 2 238,719,389 238,802,975 RGD:6480464
G Ubc ubiquitin C JBrowse link 12 36,638,457 36,642,734 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19758
    role 19705
      application 19359
        refrigerant 17258
          ammonia 16709
            organic amino compound 16708
              aromatic amine 13619
                aminopyrimidine 1063
                  5-(hydroxymethyl)cytosine 15
                    5-(beta-D-glucosylmethyl)cytosine 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19758
    subatomic particle 19756
      composite particle 19756
        hadron 19756
          baryon 19756
            nucleon 19756
              atomic nucleus 19756
                atom 19756
                  main group element atom 19641
                    main group molecular entity 19641
                      s-block molecular entity 19403
                        hydrogen molecular entity 19392
                          hydrides 18362
                            inorganic hydride 17222
                              pnictogen hydride 17186
                                nitrogen hydride 17020
                                  azane 16711
                                    ammonia 16709
                                      organic amino compound 16708
                                        aromatic amine 13619
                                          aminopyrimidine 1063
                                            cytosine 941
                                              5-(hydroxymethyl)cytosine 15
                                                5-(beta-D-glucosylmethyl)cytosine 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.