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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:rubiadin
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Accession:CHEBI:69533 term browser browse the term
Definition:A dihydroxyanthraquinone that is anthracene-9,10-dione substituted by hydroxy groups at positions 1 and 3 and a methyl group at position 2. It has been isolated from Rubia yunnanensis.
Synonyms:exact_synonym: 1,3-dihydroxy-2-methylanthracene-9,10-dione
 related_synonym: Formula=C15H10O4;   InChI=1S/C15H10O4/c1-7-11(16)6-10-12(13(7)17)15(19)9-5-3-2-4-8(9)14(10)18/h2-6,16-17H,1H3;   InChIKey=IRZTUXPRIUZXMP-UHFFFAOYSA-N;   SMILES=Cc1c(O)cc2C(=O)c3ccccc3C(=O)c2c1O
 alt_id: CHEBI:8906
 xref: CAS:117-02-2;   KEGG:C10402;   KNApSAcK:C00002862
 xref_mesh: MESH:C072500
 xref: PMID:10410466;   PMID:16213120;   PMID:19793347;   PMID:20965744;   PMID:21973054;   PMID:22822668;   PMID:24062780;   PMID:9425750;   Patent:KR20120033699;   Reaxys:1885558


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rubiadin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Calcr calcitonin receptor decreases expression EXP rubiadin results in decreased expression of CALCR mRNA CTD PMID:21945525 NCBI chr 4:31,661,270...31,736,392
Ensembl chr 4:31,661,273...31,736,392 		JBrowse link
G Car2 carbonic anhydrase 2 decreases expression EXP rubiadin results in decreased expression of CA2 mRNA CTD PMID:21945525 NCBI chr 2:86,741,625...86,756,766
Ensembl chr 2:86,741,626...86,756,818 		JBrowse link
G Ctsk cathepsin K increases activity EXP rubiadin results in increased activity of CTSK protein CTD PMID:21945525 NCBI chr 2:183,058,586...183,069,551
Ensembl chr 2:183,058,569...183,069,550 		JBrowse link
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 decreases activity ISO rubiadin results in decreased activity of CYP1A2 protein CTD PMID:33438235 NCBI chr 8:58,075,367...58,082,255
Ensembl chr 8:58,075,367...58,082,312 		JBrowse link
G Cyp2c11 cytochrome P450, subfamily 2, polypeptide 11 decreases activity ISO rubiadin results in decreased activity of CYP2C9 protein CTD PMID:33438235 NCBI chr 1:236,762,719...236,799,069
Ensembl chr 1:236,762,842...236,799,066 		JBrowse link
G Cyp2c6v1 cytochrome P450, family 2, subfamily C, polypeptide 6, variant 1 decreases activity ISO rubiadin results in decreased activity of CYP2C19 protein CTD PMID:33438235 NCBI chr 1:237,938,521...237,976,238
Ensembl chr 1:237,693,094...238,057,596 		JBrowse link
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 decreases activity ISO rubiadin results in decreased activity of CYP2D6 protein CTD PMID:33438235 NCBI chr 7:113,882,584...113,891,754
Ensembl chr 7:113,881,618...113,891,759 		JBrowse link
G Nfkbia NFKB inhibitor alpha multiple interactions EXP rubiadin inhibits the reaction [TNFSF11 protein results in increased phosphorylation of NFKBIA protein] CTD PMID:21945525 NCBI chr 6:72,858,713...72,861,941
Ensembl chr 6:72,858,712...72,861,941 		JBrowse link
G Tnfrsf11b TNF receptor superfamily member 11B increases expression EXP rubiadin results in increased expression of TNFRSF11B mRNA; rubiadin results in increased expression of TNFRSF11B protein CTD PMID:21945525 NCBI chr 7:85,566,520...85,594,526
Ensembl chr 7:85,566,520...85,594,538 		JBrowse link
G Tnfsf11 TNF superfamily member 11 decreases expression
multiple interactions		 EXP rubiadin results in decreased expression of TNFSF11 mRNA; rubiadin results in decreased expression of TNFSF11 protein
rubiadin inhibits the reaction [TNFSF11 protein results in increased phosphorylation of NFKBIA protein]		 CTD PMID:21945525 NCBI chr15:53,673,850...53,705,325
Ensembl chr15:53,673,877...53,705,445 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19876
    role 19851
      chemical role 19472
        antioxidant 16032
          rubiadin 9
Path 2
Term Annotations click to browse term
  CHEBI ontology 19876
    subatomic particle 19874
      composite particle 19874
        hadron 19874
          baryon 19874
            nucleon 19874
              atomic nucleus 19905
                atom 19905
                  main group element atom 19821
                    p-block element atom 19821
                      carbon group element atom 19768
                        carbon atom 19764
                          organic molecular entity 19764
                            organic group 18962
                              organic divalent group 18943
                                organodiyl group 18915
                                  carbonyl group 18869
                                    carbonyl compound 18869
                                      ketone 17170
                                        cyclic ketone 15686
                                          quinone 8575
                                            acenoquinone 7641
                                              anthraquinone 514
                                                hydroxyanthraquinones 503
                                                  dihydroxyanthraquinone 344
                                                    rubiadin 9
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