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ONTOLOGY REPORT - ANNOTATIONS


Term:all-trans-4-hydroxyretinoic acid
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Accession:CHEBI:63795 term browser browse the term
Definition:A retinoid that consists of all-trans-retinoic acid bearing a hydroxy substituent at position 4 on the cyclohexenyl ring.
Synonyms:exact_synonym: 4-hydroxyretinoic acid
 related_synonym: (2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethyl-3-hydroxy-1-cyclohexen-1-yl)-2,4,6,8-nonatetraenoic acid;   (2E,4E,6E,8E)-9-(3-hydroxy-2,6,6-trimethyl-1-cyclohexenyl)-3,7-dimethyl-nona-2,4,6,8-tetraenoic acid;   (7E,9E,11E,13E)-4-hydroxyretinoic acid;   4-hydroxy-(7E,9E,11E,13E)-retinoic acid;   4-hydroxy-all-trans-retinoic acid;   Formula=C20H28O3;   InChI=1S/C20H28O3/c1-14(7-6-8-15(2)13-19(22)23)9-10-17-16(3)18(21)11-12-20(17,4)5/h6-10,13,18,21H,11-12H2,1-5H3,(H,22,23)/b8-6+,10-9+,14-7+,15-13+;   InChIKey=KGUMXGDKXYTTEY-FRCNGJHJSA-N;   SMILES=CC(\\C=C\\C1=C(C)C(O)CCC1(C)C)=C/C=C/C(C)=C/C(O)=O
 xref: CAS:66592-72-1;   HMDB:HMDB0006254;   KEGG:C16677;   LIPID_MAPS_instance:LMPR01090025
 xref_mesh: MESH:C019429
 xref: PMID:10702251;   PMID:1328295;   Reaxys:2879131
 cyclic_relationship: is_conjugate_acid_of CHEBI:134178


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all-trans-4-hydroxyretinoic acid term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:6480464
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 JBrowse link 1 256,382,861 256,386,729 RGD:6480464
G Cyp2c79 cytochrome P450, family 2, subfamily c, polypeptide 79 JBrowse link 1 147,236,480 147,307,988 RGD:6480464
G Muc2 mucin 2, oligomeric mucus/gel-forming JBrowse link 1 214,663,929 214,693,197 RGD:6480464
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming JBrowse link 1 214,725,482 214,756,653 RGD:6480464
G Rara retinoic acid receptor, alpha JBrowse link 10 86,838,819 86,884,224 RGD:6480464
G Rarb retinoic acid receptor, beta JBrowse link 15 9,915,223 10,262,599 RGD:6480464
G Rarg retinoic acid receptor, gamma JBrowse link 7 143,840,739 143,863,206 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19779
    role 19727
      chemical role 19258
        antioxidant 14222
          all-trans-retinoic acid 7403
            all-trans-4-hydroxyretinoic acid 9
              (4S)-4,16-dihydroxyretinoic acid 0
              (S)-all-trans-4-hydroxyretinoic acid 0
              4-(beta-D-glucopyranuronosyloxy)retinoic acid 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19779
    subatomic particle 19777
      composite particle 19777
        hadron 19777
          baryon 19777
            nucleon 19777
              atomic nucleus 19777
                atom 19777
                  main group element atom 19664
                    p-block element atom 19664
                      carbon group element atom 19559
                        carbon atom 19548
                          organic molecular entity 19548
                            organic group 18463
                              organic divalent group 18456
                                organodiyl group 18456
                                  carbonyl group 18356
                                    carbonyl compound 18356
                                      carboxylic acid 18027
                                        monocarboxylic acid 17287
                                          alpha,beta-unsaturated monocarboxylic acid 11378
                                            retinoic acid 7664
                                              all-trans-retinoic acid 7403
                                                all-trans-4-hydroxyretinoic acid 9
                                                  (4S)-4,16-dihydroxyretinoic acid 0
                                                  (S)-all-trans-4-hydroxyretinoic acid 0
                                                  4-(beta-D-glucopyranuronosyloxy)retinoic acid 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.