Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:pyrimidine nucleotide-sugar
go back to main search page
Accession:CHEBI:61109 term browser browse the term
Definition:A nucleotide-sugar whose nucleobase is a pyrimidine.
Synonyms:related_synonym: pyrimidine nucleotide-sugars


show annotations for term's descendants           Sort by:
 
CMP-N-acetyl-beta-neuraminic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmas cytidine monophosphate N-acetylneuraminic acid synthetase affects abundance ISO CMAS protein affects the abundance of Cytidine Monophosphate N-Acetylneuraminic Acid CTD PMID:27380425 NCBI chr 4:176,994,129...177,012,445
Ensembl chr 4:176,994,129...177,012,444
JBrowse link
UDP-alpha-D-galactose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gale UDP-galactose-4-epimerase affects binding ISO Uridine Diphosphate Galactose binds to GALE protein CTD PMID:25526675 NCBI chr 5:154,310,453...154,314,959
Ensembl chr 5:154,310,453...154,314,955
JBrowse link
G Gpr17 G protein-coupled receptor 17 increases activity ISO Uridine Diphosphate Galactose results in increased activity of GPR17 protein CTD PMID:18974869 NCBI chr18:24,733,306...24,739,194
Ensembl chr18:24,734,330...24,735,349
JBrowse link
G Uxs1 UDP-glucuronate decarboxylase 1 multiple interactions ISO [Uridine Diphosphate Galactose co-treated with NAD] binds to UXS1 protein CTD PMID:25526675 NCBI chr 9:11,165,006...11,240,329
Ensembl chr 9:11,164,715...11,339,790
JBrowse link
UDP-alpha-D-glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gale UDP-galactose-4-epimerase affects binding ISO Uridine Diphosphate Glucose binds to GALE protein CTD PMID:25526675 NCBI chr 5:154,310,453...154,314,959
Ensembl chr 5:154,310,453...154,314,955
JBrowse link
G Gpr17 G protein-coupled receptor 17 increases activity ISO Uridine Diphosphate Glucose results in increased activity of GPR17 protein CTD PMID:18974869 NCBI chr18:24,733,306...24,739,194
Ensembl chr18:24,734,330...24,735,349
JBrowse link
G Uxs1 UDP-glucuronate decarboxylase 1 multiple interactions ISO [Uridine Diphosphate Glucose co-treated with NAD] binds to UXS1 protein CTD PMID:25526675 NCBI chr 9:11,165,006...11,240,329
Ensembl chr 9:11,164,715...11,339,790
JBrowse link
UDP-alpha-D-glucuronic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3gat3 beta-1,3-glucuronyltransferase 3 affects binding
multiple interactions
ISO B3GAT3 protein binds to Uridine Diphosphate Glucuronic Acid
Uridine Diphosphate Glucuronic Acid inhibits the reaction [Diacetyl results in decreased activity of B3GAT3 protein]
CTD PMID:11986319 NCBI chr 1:225,120,061...225,126,579
Ensembl chr 1:225,120,061...225,126,579
JBrowse link
G Gale UDP-galactose-4-epimerase affects binding ISO Uridine Diphosphate Glucuronic Acid binds to GALE protein CTD PMID:25526675 NCBI chr 5:154,310,453...154,314,959
Ensembl chr 5:154,310,453...154,314,955
JBrowse link
G Ppargc1a PPARG coactivator 1 alpha increases expression ISO Uridine Diphosphate Glucuronic Acid results in increased expression of PPARGC1A mRNA CTD PMID:23056435 NCBI chr14:63,095,291...63,190,688
Ensembl chr14:63,095,720...63,187,009
JBrowse link
G Ugt1a1 UDP glucuronosyltransferase family 1 member A1 multiple interactions ISO [Uridine Diphosphate Glucuronic Acid co-treated with UGT1A1 protein] results in increased glucuronidation of Labetalol CTD PMID:18098064 NCBI chr 9:95,295,701...95,302,822
Ensembl chr 9:95,161,157...95,302,822
JBrowse link
G Ugt2b7 UDP glucuronosyltransferase family 2 member B7 multiple interactions ISO [Uridine Diphosphate Glucuronic Acid co-treated with UGT2B7 protein] results in increased glucuronidation of Labetalol; Fluconazole inhibits the reaction [[Uridine Diphosphate Glucuronic Acid co-treated with UGT2B7 protein] results in increased glucuronidation of Labetalol] CTD PMID:18098064 NCBI chr14:22,597,103...22,619,968 JBrowse link
G Uxs1 UDP-glucuronate decarboxylase 1 multiple interactions ISO [Uridine Diphosphate Glucuronic Acid co-treated with NAD] binds to UXS1 protein CTD PMID:25526675 NCBI chr 9:11,165,006...11,240,329
Ensembl chr 9:11,164,715...11,339,790
JBrowse link
UDP-D-galactose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gale UDP-galactose-4-epimerase affects binding ISO Uridine Diphosphate Galactose binds to GALE protein CTD PMID:25526675 NCBI chr 5:154,310,453...154,314,959
Ensembl chr 5:154,310,453...154,314,955
JBrowse link
G Gpr17 G protein-coupled receptor 17 increases activity ISO Uridine Diphosphate Galactose results in increased activity of GPR17 protein CTD PMID:18974869 NCBI chr18:24,733,306...24,739,194
Ensembl chr18:24,734,330...24,735,349
JBrowse link
G Uxs1 UDP-glucuronate decarboxylase 1 multiple interactions ISO [Uridine Diphosphate Galactose co-treated with NAD] binds to UXS1 protein CTD PMID:25526675 NCBI chr 9:11,165,006...11,240,329
Ensembl chr 9:11,164,715...11,339,790
JBrowse link
UDP-D-glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gale UDP-galactose-4-epimerase affects binding ISO Uridine Diphosphate Glucose binds to GALE protein CTD PMID:25526675 NCBI chr 5:154,310,453...154,314,959
Ensembl chr 5:154,310,453...154,314,955
JBrowse link
G Gpr17 G protein-coupled receptor 17 increases activity ISO Uridine Diphosphate Glucose results in increased activity of GPR17 protein CTD PMID:18974869 NCBI chr18:24,733,306...24,739,194
Ensembl chr18:24,734,330...24,735,349
JBrowse link
G Uxs1 UDP-glucuronate decarboxylase 1 multiple interactions ISO [Uridine Diphosphate Glucose co-treated with NAD] binds to UXS1 protein CTD PMID:25526675 NCBI chr 9:11,165,006...11,240,329
Ensembl chr 9:11,164,715...11,339,790
JBrowse link
UDP-N-acetyl-alpha-D-galactosamine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gale UDP-galactose-4-epimerase affects binding ISO Uridine Diphosphate N-Acetylgalactosamine binds to GALE protein CTD PMID:25526675 NCBI chr 5:154,310,453...154,314,959
Ensembl chr 5:154,310,453...154,314,955
JBrowse link
UDP-N-acetyl-alpha-D-glucosamine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 multiple interactions
increases abundance
ISO Triazines inhibits the reaction [IDH2 protein mutant form results in increased abundance of Uridine Diphosphate N-Acetylglucosamine] CTD PMID:27469509 NCBI chr 1:141,874,354...141,893,674
Ensembl chr 1:141,866,283...141,893,705
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19773
    chemical entity 19773
      atom 19772
        nonmetal atom 19651
          nitrogen atom 18622
            nitrogen molecular entity 18622
              nucleobase-containing molecular entity 5375
                nucleotide conjugate 18
                  nucleotide-carbohydrate 16
                    nucleotide-sugar 16
                      pyrimidine nucleotide-sugar 9
                        2-[(2R,3R,4R,5S,6R)-3-Acetamido-2-[[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-5-hydroxy-6-(hydroxymethyl)oxan-4-yl]oxy-2-phosphonooxypropanoic acid 0
                        CDP-4-dehydro-3,6-dideoxy-D-glucose epimer 0
                        CDP-ascarylose 0
                        CDP-sugar + 0
                        CMP-sugar + 1
                        N-Acetyl-b-neuraminic acid 0
                        TDP-sugar + 0
                        UDP-4-keto-rhamnose 0
                        UDP-L-arabinofuranose 0
                        UDP-N-acetyl-D-galactosaminuronic acid 0
                        UDP-N-acetylmuraminate 0
                        UDP-sugar + 8
                        Uridine 5'-Diphospho-N-acetylgalactosamine 0
                        Uridine 5'-diphosphoglucose 0
                        dTDP 1-ester with 2,6-dideoxy-L-erythro-hexopyranos-3-ulose 0
                        dTDP-(3R)-amino-3,6-dideoxy-D-glucose 0
                        dTDP-2,6-dideoxy-D-kanosamine 0
                        dTDP-3,4-dioxo-2,6-dideoxy-L-glucose 0
                        dTDP-3-amino-2,3,6-trideoxy-C-methyl-D-erythro-hexopyranos-4-ulose 0
                        dTDP-3-amino-2,3,6-trideoxy-D-threo-hexopyranos-4-ulose 0
                        dTDP-3-methyl-4-oxo-2,6-dideoxy-D-glucose 0
                        dTDP-3-oxo-2,6-dideoxy-D-glucose 0
                        dTDP-4-(methylamino)-2,3,4,6-tetradeoxy-alpha-D-glucose 0
                        dTDP-4-amino-2,3,4,6-tetradeoxy-alpha-D-glucose 0
                        dTDP-4-amino-4,6-dideoxy-5-C-methyl-L-mannose 0
                        dTDP-4-dehydro-2,3,6-trideoxy-alpha-D-glucose 0
                        dTDP-4-dimethylamino-4,6-dideoxy-5-C-methyl-L-mannose 0
                        dTDP-4-oxo-2,6-dideoxy-D-allose 0
                        dTDP-4-oxo-2,6-dideoxy-L-mannose 0
                        dTDP-4-oxo-5-C-methyl-L-rhamnose 0
                        dTDP-D-angolosamine 0
                        dTDP-D-olivose 0
                        dTDP-L-4-oxovancosamine 0
                        dTDP-L-megosamine 0
                        dTDP-L-oleandrose 0
                        dTDP-L-olivose 0
                        dTDP-L-ristosamine 0
                        dTDP-alpha-D-forosamine 0
                        dTDP-beta-D-mycarose 0
                        dTDP-beta-D-oliose 0
                        dTDP-beta-L-rhodinose 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19773
    subatomic particle 19772
      composite particle 19772
        hadron 19772
          baryon 19772
            nucleon 19772
              atomic nucleus 19772
                atom 19772
                  main group element atom 19662
                    p-block element atom 19662
                      chalcogen 19393
                        oxygen atom 19356
                          oxygen molecular entity 19356
                            hydroxides 19083
                              oxoacid 18310
                                pnictogen oxoacid 10315
                                  phosphorus oxoacid 9240
                                    phosphoric acids 7960
                                      phosphoric acid 7960
                                        phosphoric acid derivative 7640
                                          phosphate 7640
                                            organic phosphate 7639
                                              nucleoside phosphate 1727
                                                nucleotide 1726
                                                  nucleotide conjugate 18
                                                    nucleotide-carbohydrate 16
                                                      nucleotide-sugar 16
                                                        pyrimidine nucleotide-sugar 9
                                                          2-[(2R,3R,4R,5S,6R)-3-Acetamido-2-[[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-5-hydroxy-6-(hydroxymethyl)oxan-4-yl]oxy-2-phosphonooxypropanoic acid 0
                                                          CDP-4-dehydro-3,6-dideoxy-D-glucose epimer 0
                                                          CDP-ascarylose 0
                                                          CDP-sugar + 0
                                                          CMP-sugar + 1
                                                          N-Acetyl-b-neuraminic acid 0
                                                          TDP-sugar + 0
                                                          UDP-4-keto-rhamnose 0
                                                          UDP-L-arabinofuranose 0
                                                          UDP-N-acetyl-D-galactosaminuronic acid 0
                                                          UDP-N-acetylmuraminate 0
                                                          UDP-sugar + 8
                                                          Uridine 5'-Diphospho-N-acetylgalactosamine 0
                                                          Uridine 5'-diphosphoglucose 0
                                                          dTDP 1-ester with 2,6-dideoxy-L-erythro-hexopyranos-3-ulose 0
                                                          dTDP-(3R)-amino-3,6-dideoxy-D-glucose 0
                                                          dTDP-2,6-dideoxy-D-kanosamine 0
                                                          dTDP-3,4-dioxo-2,6-dideoxy-L-glucose 0
                                                          dTDP-3-amino-2,3,6-trideoxy-C-methyl-D-erythro-hexopyranos-4-ulose 0
                                                          dTDP-3-amino-2,3,6-trideoxy-D-threo-hexopyranos-4-ulose 0
                                                          dTDP-3-methyl-4-oxo-2,6-dideoxy-D-glucose 0
                                                          dTDP-3-oxo-2,6-dideoxy-D-glucose 0
                                                          dTDP-4-(methylamino)-2,3,4,6-tetradeoxy-alpha-D-glucose 0
                                                          dTDP-4-amino-2,3,4,6-tetradeoxy-alpha-D-glucose 0
                                                          dTDP-4-amino-4,6-dideoxy-5-C-methyl-L-mannose 0
                                                          dTDP-4-dehydro-2,3,6-trideoxy-alpha-D-glucose 0
                                                          dTDP-4-dimethylamino-4,6-dideoxy-5-C-methyl-L-mannose 0
                                                          dTDP-4-oxo-2,6-dideoxy-D-allose 0
                                                          dTDP-4-oxo-2,6-dideoxy-L-mannose 0
                                                          dTDP-4-oxo-5-C-methyl-L-rhamnose 0
                                                          dTDP-D-angolosamine 0
                                                          dTDP-D-olivose 0
                                                          dTDP-L-4-oxovancosamine 0
                                                          dTDP-L-megosamine 0
                                                          dTDP-L-oleandrose 0
                                                          dTDP-L-olivose 0
                                                          dTDP-L-ristosamine 0
                                                          dTDP-alpha-D-forosamine 0
                                                          dTDP-beta-D-mycarose 0
                                                          dTDP-beta-D-oliose 0
                                                          dTDP-beta-L-rhodinose 0
paths to the root