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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:benzyl bromides
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Accession:CHEBI:59857 term browser browse the term
Definition:Compounds containing a (bromomethyl)benzene skeleton.
Synonyms:related_synonym: benzylic bromide;   benzylic bromides


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4-nitrobenzyl bromide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1c2 aldo-keto reductase family 1, member C2 increases activity
increases expression
ISO 4-nitrobenzyl bromide results in increased activity of AKR1C2 promoter
4-nitrobenzyl bromide results in increased expression of AKR1C2 mRNA
CTD PMID:21195160 PMID:25724174 NCBI chr17:69,388,337...69,435,160
Ensembl chr17:69,388,335...69,404,341
JBrowse link
G Atf3 activating transcription factor 3 increases expression ISO 4-nitrobenzyl bromide results in increased expression of ATF3 mRNA CTD PMID:23999411 NCBI chr13:109,817,892...109,849,632
Ensembl chr13:109,817,728...109,849,632
JBrowse link
G Dnajb4 DnaJ heat shock protein family (Hsp40) member B4 increases expression ISO 4-nitrobenzyl bromide results in increased expression of DNAJB4 mRNA CTD PMID:23999411 NCBI chr 2:257,394,692...257,425,344
Ensembl chr 2:257,394,818...257,425,242
JBrowse link
G Gclm glutamate cysteine ligase, modifier subunit increases expression ISO 4-nitrobenzyl bromide results in increased expression of GCLM mRNA CTD PMID:23999411 NCBI chr 2:225,827,504...225,847,876
Ensembl chr 2:225,827,504...225,847,874
JBrowse link
G Hmox1 heme oxygenase 1 increases expression ISO 4-nitrobenzyl bromide results in increased expression of HMOX1 mRNA CTD PMID:23445166 PMID:25724174 PMID:26244607 NCBI chr19:14,508,634...14,515,455
Ensembl chr19:14,508,616...14,515,456
JBrowse link
G Il18 interleukin 18 increases expression ISO 4-nitrobenzyl bromide results in increased expression of IL18 protein CTD PMID:23063874 NCBI chr 8:55,009,666...55,016,286
Ensembl chr 8:54,993,859...55,016,299
JBrowse link
G LOC686035 similar to heat shock 70kDa protein 6 (HSP70B) increases expression ISO 4-nitrobenzyl bromide results in increased expression of HSPA6 mRNA CTD PMID:23999411 NCBI chr13:89,408,703...89,411,500 JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 increases expression ISO 4-nitrobenzyl bromide results in increased expression of NQO1 mRNA CTD PMID:25724174 NCBI chr19:38,422,210...38,437,103
Ensembl chr19:38,422,164...38,437,180
JBrowse link
benzyl bromide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cxcr4 C-X-C motif chemokine receptor 4 increases expression ISO benzyl bromide results in increased expression of CXCR4 mRNA CTD PMID:20713136 NCBI chr13:45,314,952...45,318,856
Ensembl chr13:45,314,933...45,318,878
JBrowse link
G Hmox1 heme oxygenase 1 increases expression ISO benzyl bromide results in increased expression of HMOX1 mRNA CTD PMID:20713136 NCBI chr19:14,508,634...14,515,455
Ensembl chr19:14,508,616...14,515,456
JBrowse link
G Il1b interleukin 1 beta increases expression ISO benzyl bromide results in increased expression of IL1B mRNA CTD PMID:20713136 NCBI chr 3:121,876,256...121,882,637
Ensembl chr 3:121,876,263...121,882,726
JBrowse link
G Il1r2 interleukin 1 receptor type 2 increases expression ISO benzyl bromide results in increased expression of IL1R2 mRNA CTD PMID:20713136 NCBI chr 9:46,840,646...46,881,241
Ensembl chr 9:46,840,992...46,881,264
JBrowse link
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 increases expression ISO benzyl bromide results in increased expression of PMAIP1 mRNA CTD PMID:20713136 NCBI chr18:62,159,128...62,179,635
Ensembl chr18:62,174,670...62,181,102
JBrowse link
G Tnfaip6 TNF alpha induced protein 6 increases expression ISO benzyl bromide results in increased expression of TNFAIP6 mRNA CTD PMID:20713136 NCBI chr 3:37,545,238...37,564,704
Ensembl chr 3:37,545,238...37,564,699
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19840
    chemical entity 19840
      group 19755
        polyatomic entity 19754
          heteroatomic molecular entity 19681
            halide 18104
              organohalogen compound 17857
                benzyl halide 14
                  benzyl bromides 13
                    4-nitrobenzyl bromide 8
                    benzyl bromide 6
Path 2
Term Annotations click to browse term
  CHEBI ontology 19840
    subatomic particle 19838
      composite particle 19838
        hadron 19838
          baryon 19838
            nucleon 19838
              atomic nucleus 19838
                atom 19838
                  main group element atom 19730
                    p-block element atom 19730
                      carbon group element atom 19635
                        carbon atom 19624
                          organic molecular entity 19624
                            heteroorganic entity 19216
                              organohalogen compound 17857
                                organobromine compound 5407
                                  benzyl bromides 13
                                    4-nitrobenzyl bromide 8
                                    benzyl bromide 6
paths to the root