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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:Ginkgolide A
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Accession:CHEBI:5355 term browser browse the term
Definition:A diterpene lactone that has formula C20H24O9.
Synonyms:related_synonym: Formula=C20H24O9;   InChI=1S/C20H24O9/c1-7-12(22)26-10-6-17-9-5-8(16(2,3)4)18(17)11(21)13(23)28-15(18)29-20(17,14(24)27-9)19(7,10)25/h7-11,15,21,25H,5-6H2,1-4H3/t7-,8+,9-,10+,11+,15+,17?,18?,19-,20-/m1/s1;   InChIKey=FPUXKXIZEIDQKW-TVPHMGRTSA-N;   SMILES=C[C@@H]1C(=O)O[C@H]2CC34[C@H]5C[C@@H](C(C)(C)C)C33C(O)C(=O)O[C@H]3O[C@@]4(C(=O)O5)[C@@]12O
 xref: CAS:15291-75-5;   KEGG:C07601;   KNApSAcK:C00003429
 xref_mesh: MESH:C477042



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Ginkgolide A term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP-binding cassette, sub-family B member 1A increases expression ISO ginkgolide A results in increased expression of ABCB1 mRNA CTD PMID:19034627 NCBI chr 5:8,617,091...8,798,575
Ensembl chr 5:8,710,077...8,798,575
JBrowse link
G Abcc2 ATP-binding cassette, sub-family member 2 increases expression ISO ginkgolide A results in increased expression of ABCC2 mRNA CTD PMID:19034627 NCBI chr19:43,770,747...43,826,771
Ensembl chr19:43,770,631...43,829,179
JBrowse link
G Acta2 actin alpha 2, smooth muscle, aorta multiple interactions EXP ginkgolide A inhibits the reaction [Carbon Tetrachloride results in increased expression of ACTA2 protein] CTD PMID:31697926 NCBI chr19:34,217,736...34,232,985
Ensembl chr19:34,218,490...34,232,990
JBrowse link
G Alb albumin multiple interactions EXP ginkgolide A inhibits the reaction [Carbon Tetrachloride results in decreased expression of ALB protein] CTD PMID:31697926 NCBI chr 5:90,608,729...90,624,461
Ensembl chr 5:90,608,756...90,624,461
JBrowse link
G Calca calcitonin/calcitonin-related polypeptide, alpha multiple interactions EXP ginkgolide A inhibits the reaction [Carbon Tetrachloride results in increased expression of CALCA protein] CTD PMID:31697926 NCBI chr 7:114,225,223...114,236,145
Ensembl chr 7:114,230,713...114,235,592
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 multiple interactions ISO [Quercetin co-treated with kaempferol co-treated with 3-methylquercetin co-treated with ginkgolide A co-treated with ginkgolide B co-treated with ginkgolide C co-treated with ginkgolide J co-treated with bilobalide] affects the activity of CYP1A1 protein; [Quercetin co-treated with kaempferol co-treated with 3-methylquercetin co-treated with ginkgolide A co-treated with ginkgolide B co-treated with ginkgolide C co-treated with ginkgolide J co-treated with bilobalide] inhibits the reaction [Benzo(a)pyrene results in increased activity of CYP1A1 protein]; [Quercetin co-treated with kaempferol co-treated with 3-methylquercetin co-treated with ginkgolide A co-treated with ginkgolide B co-treated with ginkgolide C co-treated with ginkgolide J co-treated with bilobalide] inhibits the reaction [Tetrachlorodibenzodioxin results in increased activity of CYP1A1 protein] CTD PMID:21329749 NCBI chr 9:57,595,211...57,611,107
Ensembl chr 9:57,595,211...57,611,107
JBrowse link
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 increases activity
increases expression
ISO ginkgolide A results in increased activity of CYP1A2 protein
ginkgolide A results in increased expression of CYP1A2 mRNA
CTD PMID:18421621 NCBI chr 9:57,584,220...57,590,938
Ensembl chr 9:57,584,220...57,590,986
JBrowse link
G Cyp2b10 cytochrome P450, family 2, subfamily b, polypeptide 10 increases expression ISO ginkgolide A results in increased expression of CYP2B6 mRNA CTD PMID:19034627 NCBI chr 7:25,597,083...25,626,049
Ensembl chr 7:25,597,045...25,626,049
JBrowse link
G Gpt glutamic pyruvic transaminase, soluble multiple interactions EXP ginkgolide A inhibits the reaction [Carbon Tetrachloride results in increased expression of GPT protein] CTD PMID:31697926 NCBI chr15:76,580,926...76,583,875
Ensembl chr15:76,579,916...76,583,886
JBrowse link
G Ifng interferon gamma multiple interactions EXP ginkgolide A affects the reaction [Carbon Tetrachloride results in increased expression of IFNG protein] CTD PMID:31697926 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797
JBrowse link
G Il6 interleukin 6 multiple interactions EXP ginkgolide A inhibits the reaction [Carbon Tetrachloride results in increased expression of IL6 protein] CTD PMID:31697926 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979
JBrowse link
G Lbp lipopolysaccharide binding protein multiple interactions EXP ginkgolide A inhibits the reaction [Carbon Tetrachloride results in increased expression of LBP protein] CTD PMID:31697926 NCBI chr 2:158,148,413...158,174,772
Ensembl chr 2:158,148,413...158,174,772
JBrowse link
G Myd88 myeloid differentiation primary response gene 88 multiple interactions EXP ginkgolide A inhibits the reaction [Carbon Tetrachloride results in increased expression of MYD88 protein] CTD PMID:31697926 NCBI chr 9:119,165,000...119,169,084
Ensembl chr 9:119,165,000...119,170,477
JBrowse link
G Nr1i2 nuclear receptor subfamily 1, group I, member 2 increases activity
multiple interactions
ISO
EXP
ginkgolide A results in increased activity of NR1I2 protein
ginkgolide A inhibits the reaction [Carbon Tetrachloride results in decreased expression of and affects the localization of NR1I2 protein]
CTD PMID:19034627 PMID:31697926 NCBI chr16:38,068,711...38,115,211
Ensembl chr16:38,068,685...38,115,186
JBrowse link
G Ocln occludin multiple interactions EXP ginkgolide A inhibits the reaction [Carbon Tetrachloride results in decreased expression of OCLN protein] CTD PMID:31697926 NCBI chr13:100,633,012...100,689,226
Ensembl chr13:100,633,015...100,689,226
JBrowse link
G Rela v-rel reticuloendotheliosis viral oncogene homolog A (avian) multiple interactions EXP ginkgolide A inhibits the reaction [Carbon Tetrachloride results in increased expression of RELA protein] CTD PMID:31697926 NCBI chr19:5,686,993...5,698,162
Ensembl chr19:5,687,511...5,698,158
JBrowse link
G Tjp1 tight junction protein 1 multiple interactions EXP ginkgolide A inhibits the reaction [Carbon Tetrachloride results in decreased expression of TJP1 protein] CTD PMID:31697926 NCBI chr 7:64,945,913...65,177,629
Ensembl chr 7:64,945,913...65,177,529
JBrowse link
G Tlr4 toll-like receptor 4 multiple interactions EXP ginkgolide A inhibits the reaction [Carbon Tetrachloride results in increased expression of TLR4 protein] CTD PMID:31697926 NCBI chr 4:66,745,788...66,765,338
Ensembl chr 4:66,745,821...66,848,521
JBrowse link
G Tnf tumor necrosis factor multiple interactions EXP ginkgolide A inhibits the reaction [Carbon Tetrachloride results in increased expression of TNF protein] CTD PMID:31697926 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
G Ugt1a1 UDP glucuronosyltransferase 1 family, polypeptide A1 increases expression ISO ginkgolide A results in increased expression of UGT1A1 mRNA CTD PMID:19034627 NCBI chr 1:88,139,681...88,147,724
Ensembl chr 1:88,139,681...88,146,719
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 22188
    chemical entity 22187
      atom 22180
        nonmetal atom 22063
          carbon atom 21840
            organic molecular entity 21840
              isoprenoid 14498
                terpenoid 14187
                  diterpenoid 13436
                    diterpene lactone 255
                      Ginkgolide A 20
Path 2
Term Annotations click to browse term
  CHEBI ontology 22188
    subatomic particle 22180
      composite particle 22180
        hadron 22180
          baryon 22180
            nucleon 22180
              atomic nucleus 22180
                atom 22180
                  main group element atom 22114
                    p-block element atom 22114
                      carbon group element atom 21915
                        carbon atom 21840
                          organic molecular entity 21840
                            organic group 20283
                              organic divalent group 20165
                                organodiyl group 20165
                                  carbonyl group 20159
                                    carbonyl compound 20159
                                      carboxylic ester 17098
                                        lactone 13018
                                          terpene lactone 2177
                                            diterpene lactone 255
                                              Ginkgolide A 20
paths to the root