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ONTOLOGY REPORT - ANNOTATIONS


Term:apo carotenoid
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Accession:CHEBI:53183 term browser browse the term
Definition:A compound arising from loss of part of the carotene skeleton (excluding retinoids)
Synonyms:related_synonym: apo carotenoids;   apocarotenoid;   apocarotenoids


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(+)-abscisic acid term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccl2 C-C motif chemokine ligand 2 JBrowse link 10 69,412,065 69,413,863 RGD:6480464
8'-apo-beta,psi-caroten-8'-al term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acadm acyl-CoA dehydrogenase medium chain JBrowse link 2 260,124,418 260,148,589 RGD:6480464
G Adh5 alcohol dehydrogenase 5 (class III), chi polypeptide JBrowse link 2 243,728,500 243,740,907 RGD:6480464
G Aldh1b1 aldehyde dehydrogenase 1 family, member B1 JBrowse link 5 61,382,351 61,387,359 RGD:6480464
G Aldh3b1 aldehyde dehydrogenase 3 family, member B1 JBrowse link 1 219,145,457 219,181,536 RGD:6480464
G Aldh4a1 aldehyde dehydrogenase 4 family, member A1 JBrowse link 5 158,090,238 158,115,725 RGD:6480464
G Ank2 ankyrin 2 JBrowse link 2 231,224,643 231,522,655 RGD:6480464
G Ank3 ankyrin 3 JBrowse link 20 19,948,767 20,480,628 RGD:6480464
G Asah1 N-acylsphingosine amidohydrolase 1 JBrowse link 16 53,998,604 54,030,006 RGD:6480464
G Asb1 ankyrin repeat and SOCS box-containing 1 JBrowse link 9 98,668,231 98,689,471 RGD:6480464
G Asb9 ankyrin repeat and SOCS box-containing 9 JBrowse link X 31,700,637 31,745,790 RGD:6480464
G Bax BCL2 associated X, apoptosis regulator JBrowse link 1 101,451,801 101,457,207 RGD:6480464
G Bco2 beta-carotene oxygenase 2 JBrowse link 8 54,965,577 54,990,604 RGD:6480464
G Casp8ap2 caspase 8 associated protein 2 JBrowse link 5 47,853,699 47,891,147 RGD:6480464
G Cdh1 cadherin 1 JBrowse link 19 38,768,467 38,838,395 RGD:6480464
G Cldn10 claudin 10 JBrowse link 15 104,026,590 104,115,748 RGD:6480464
G Cldn18 claudin 18 JBrowse link 8 107,933,725 107,960,656 RGD:6480464
G Col1a1 collagen type I alpha 1 chain JBrowse link 10 82,745,801 82,762,790 RGD:6480464
G Col4a1 collagen type IV alpha 1 chain JBrowse link 16 83,522,162 83,632,153 RGD:6480464
G Col4a2 collagen type IV alpha 2 chain JBrowse link 16 83,386,388 83,522,169 RGD:6480464
G Crabp2 cellular retinoic acid binding protein 2 JBrowse link 2 187,322,416 187,326,794 RGD:6480464
G Ctsb cathepsin B JBrowse link 15 46,316,741 46,337,613 RGD:6480464
G Cxcl12 C-X-C motif chemokine ligand 12 JBrowse link 4 149,261,044 149,273,891 RGD:6480464
G Cxcl6 C-X-C motif chemokine ligand 6 JBrowse link 14 18,860,201 18,920,839 RGD:6480464
G Cxcl9 C-X-C motif chemokine ligand 9 JBrowse link 14 17,228,832 17,233,743 RGD:6480464
G Cxcr4 C-X-C motif chemokine receptor 4 JBrowse link 13 45,314,952 45,318,856 RGD:6480464
G Dlx2 distal-less homeobox 2 JBrowse link 3 58,180,088 58,181,971 RGD:6480464
G Dlx4 distal-less homeobox 4 JBrowse link 10 82,958,525 82,963,919 RGD:6480464
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 1 80,293,574 80,307,334 RGD:6480464
G Ets1 ETS proto-oncogene 1, transcription factor JBrowse link 8 33,756,634 33,879,625 RGD:6480464
G Fas Fas cell surface death receptor JBrowse link 1 252,589,785 252,624,790 RGD:6480464
G Fasn fatty acid synthase JBrowse link 10 109,987,735 110,005,901 RGD:6480464
G Gata6 GATA binding protein 6 JBrowse link 18 2,415,821 2,447,087 RGD:6480464
G Gbp1 guanylate binding protein 1 JBrowse link 2 248,343,334 248,423,402 RGD:6480464
G Gstk1 glutathione S-transferase kappa 1 JBrowse link 4 71,621,777 71,626,096 RGD:6480464
G Gstm2 glutathione S-transferase mu 2 JBrowse link 2 210,778,041 210,782,807 RGD:6480464
G Gstm3l glutathione S-transferase mu 3-like JBrowse link 2 210,761,729 210,766,501 RGD:6480464
G Gstm4 glutathione S-transferase mu 4 JBrowse link 2 210,834,013 210,839,242 RGD:6480464
G Gstz1 glutathione S-transferase zeta 1 JBrowse link 6 111,176,798 111,187,246 RGD:6480464
G Hoxa7 homeobox A7 JBrowse link 4 82,184,299 82,187,890 RGD:6480464
G Hoxb6 homeo box B6 JBrowse link 10 84,147,331 84,150,238 RGD:6480464
G Hoxc10 homeo box C10 JBrowse link 7 144,577,578 144,582,802 RGD:6480464
G Irf8 interferon regulatory factor 8 JBrowse link 19 54,314,859 54,336,643 RGD:6480464
G Irx4 iroquois homeobox 4 JBrowse link 1 32,634,774 32,645,151 RGD:6480464
G Itgb4 integrin subunit beta 4 JBrowse link 10 104,524,000 104,560,180 RGD:6480464
G Ivl involucrin JBrowse link 2 192,761,171 192,773,346 RGD:6480464
G Krt17 keratin 17 JBrowse link 10 88,158,993 88,163,712 RGD:6480464
G Krt2 keratin 2 JBrowse link 7 143,412,858 143,420,463 RGD:6480464
G Krt7 keratin 7 JBrowse link 7 143,059,731 143,075,907 RGD:6480464
G Lhx3 LIM homeobox 3 JBrowse link 3 3,653,861 3,662,509 RGD:6480464
G Mcl1 MCL1 apoptosis regulator, BCL2 family member JBrowse link 2 197,786,212 197,788,992 RGD:6480464
G Meis2 Meis homeobox 2 JBrowse link 3 107,560,172 107,762,732 RGD:6480464
G Meox1 mesenchyme homeobox 1 JBrowse link 10 89,797,011 89,817,009 RGD:6480464
G Mnx1 motor neuron and pancreas homeobox 1 JBrowse link 4 2,376,350 2,381,308 RGD:6480464
G Msh5 mutS homolog 5 JBrowse link 20 5,020,690 5,037,125 RGD:6480464
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming JBrowse link 1 214,725,482 214,756,653 RGD:6480464
G Nos1 nitric oxide synthase 1 JBrowse link 12 44,214,949 44,405,530 RGD:6480464
G Olr1 oxidized low density lipoprotein receptor 1 JBrowse link 4 163,239,853 163,261,937 RGD:6480464
G Pcdhgc3 protocadherin gamma subfamily C, 3 JBrowse link 18 30,954,552 30,971,113 RGD:6480464
G Plscr1 phospholipid scramblase 1 JBrowse link 8 99,625,523 99,645,882 RGD:6480464
G Plscr3 phospholipid scramblase 3 JBrowse link 10 56,452,632 56,458,390 RGD:6480464
G Plscr4 phospholipid scramblase 4 JBrowse link 8 99,880,073 99,917,733 RGD:6480464
G Rad51ap1 RAD51 associated protein 1 JBrowse link 4 159,469,803 159,482,869 RGD:6480464
G Rad51d RAD51 paralog D JBrowse link 10 70,222,703 70,241,352 RGD:6480464
G Rara retinoic acid receptor, alpha JBrowse link 10 86,838,819 86,884,224 RGD:6480464
G Rarb retinoic acid receptor, beta JBrowse link 15 9,915,223 10,262,599 RGD:6480464
G Rarres1 retinoic acid receptor responder 1 JBrowse link 2 164,650,722 164,684,982 RGD:6480464
G Six6 SIX homeobox 6 JBrowse link 6 95,816,749 95,821,729 RGD:6480464
G Sod1 superoxide dismutase 1 JBrowse link 11 30,363,282 30,368,858 RGD:6480464
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 JBrowse link 6 111,334,408 111,417,960 RGD:6480464
G Srebf1 sterol regulatory element binding transcription factor 1 JBrowse link 10 46,570,996 46,593,021 RGD:6480464
G Tgm4 transglutaminase 4 JBrowse link 8 132,117,279 132,157,485 RGD:6480464
G Tnfrsf9 TNF receptor superfamily member 9 JBrowse link 5 168,009,245 168,035,813 RGD:6480464
G Tnfsf10 TNF superfamily member 10 JBrowse link 2 113,008,008 113,026,899 RGD:6480464
G Txndc9 thioredoxin domain containing 9 JBrowse link 9 44,647,707 44,657,779 RGD:6480464
G Xrcc3 X-ray repair cross complementing 3 JBrowse link 6 136,366,917 136,380,751 RGD:6480464
alpha-ionone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gna15 G protein subunit alpha 15 JBrowse link 7 11,054,249 11,075,152 RGD:6480464
G Olr1513 olfactory receptor 1513 JBrowse link 10 61,033,113 61,034,051 RGD:6480464
G Olr59 olfactory receptor 59 JBrowse link 1 167,906,030 167,940,688 RGD:6480464
beta-damascenone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Calml5 calmodulin-like 5 JBrowse link 17 70,044,956 70,045,886 RGD:6480464
G Casp14 caspase 14 JBrowse link 7 13,938,376 13,944,286 RGD:6480464
G Ces3a carboxylesterase 3a JBrowse link 19 37,070,705 37,079,411 RGD:6480464
G Clca1 chloride channel accessory 1 JBrowse link 2 250,897,980 250,923,711 RGD:6480464
G Clca2 chloride channel accessory 2 JBrowse link 2 250,954,423 250,981,544 RGD:6480464
G Cyp17a1 cytochrome P450, family 17, subfamily a, polypeptide 1 JBrowse link 1 266,422,127 266,429,947 RGD:6480464
G Fcgbp Fc fragment of IgG binding protein JBrowse link 1 85,003,280 85,046,840 RGD:6480464
G Flg filaggrin JBrowse link 2 193,565,401 193,574,297 RGD:6480464
G Hrnr hornerin JBrowse link 2 193,626,283 193,639,848 RGD:6480464
G Il20ra interleukin 20 receptor subunit alpha JBrowse link 1 15,180,328 15,222,785 RGD:6480464
G Il36rn interleukin 36 receptor antagonist JBrowse link 3 1,385,256 1,392,275 RGD:6480464
G Krt1 keratin 1 JBrowse link 7 143,448,318 143,453,544 RGD:6480464
G Krt10 keratin 10 JBrowse link 10 87,296,445 87,301,307 RGD:6480464
G Lce1c late cornified envelope 1C RGD:6480464
G Lce1d late cornified envelope 1D RGD:6480464
G Lce1f late cornified envelope 1F JBrowse link 2 192,990,607 192,992,193 RGD:6480464
G Lce1l late cornified envelope 1L JBrowse link 2 193,164,403 193,165,736 RGD:6480464
G Lipm lipase, family member M JBrowse link 1 252,409,232 252,428,567 RGD:6480464
G LOC100909600 PI-PLC X domain-containing protein 1-like JBrowse link 12 52,674,837 52,678,047 RGD:6480464
G Lor loricrin JBrowse link 2 191,984,455 191,990,713 RGD:6480464
G Otop3 otopetrin 3 JBrowse link 10 103,887,045 103,898,331 RGD:6480464
G Pla2g4f phospholipase A2, group IVF JBrowse link 3 112,068,617 112,083,978 RGD:6480464
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 JBrowse link 5 16,904,926 16,930,111 RGD:6480464
G Susd2 sushi domain containing 2 JBrowse link 20 13,965,098 13,972,547 RGD:6480464
G Tmprss4 transmembrane serine protease 4 JBrowse link 8 49,469,804 49,503,304 RGD:6480464
beta-ionone term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:6480464
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:6480464
G Ccnd1 cyclin D1 JBrowse link 1 218,090,750 218,100,447 RGD:6480464
G Cdk2 cyclin dependent kinase 2 JBrowse link 7 3,124,953 3,132,533 RGD:6480464
G Cdk4 cyclin-dependent kinase 4 JBrowse link 7 70,345,971 70,352,689 RGD:6480464
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase JBrowse link 2 27,480,224 27,500,654 RGD:6480464
G Lmnb1 lamin B1 JBrowse link 18 51,785,111 51,822,264 RGD:6480464
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:6480464
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:6480464
G Nfkb1 nuclear factor kappa B subunit 1 JBrowse link 2 240,773,520 240,890,053 RGD:6480464
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:6480464
G Olr59 olfactory receptor 59 JBrowse link 1 167,906,030 167,940,688 RGD:6480464
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:6480464
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:6480464
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:6480464
G Tyr tyrosinase JBrowse link 1 151,012,598 151,106,802 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19657
    chemical entity 19655
      atom 19653
        nonmetal atom 19521
          carbon atom 19409
            organic molecular entity 19409
              isoprenoid 9231
                apo carotenoid 120
                  10'-apo-beta-carotenal 0
                  13-apo-beta-carotenone 0
                  2,6-dimethyldeca-2,4,6,8-tetraenedial 0
                  4,4'-diapolycopenedial 0
                  4,9-dimethyldodeca-2,4,6,8,10-pentaenedial 0
                  4-methylocta-2,4,6-trienedial 0
                  6'-apo-beta-carotenal 0
                  9-cis-10'-apo-beta-carotenal 0
                  apo carotenoid C25 terpenoid + 0
                  apo carotenoid C35 terpenoid + 0
                  apo carotenoid diterpenoid + 0
                  apo carotenoid monoterpenoid + 43
                  apo carotenoid sesquiterpenoid + 1
                  apo carotenoid triterpenoid + 76
                  bixin dialdehyde 0
                  citranaxanthin 0
                  rosafluine 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19657
    subatomic particle 19653
      composite particle 19653
        hadron 19653
          baryon 19653
            nucleon 19653
              atomic nucleus 19653
                atom 19653
                  main group element atom 19534
                    main group molecular entity 19534
                      p-block molecular entity 19534
                        carbon group molecular entity 19417
                          organic molecular entity 19409
                            lipid 16950
                              isoprenoid 9231
                                apo carotenoid 120
                                  10'-apo-beta-carotenal 0
                                  13-apo-beta-carotenone 0
                                  2,6-dimethyldeca-2,4,6,8-tetraenedial 0
                                  4,4'-diapolycopenedial 0
                                  4,9-dimethyldodeca-2,4,6,8,10-pentaenedial 0
                                  4-methylocta-2,4,6-trienedial 0
                                  6'-apo-beta-carotenal 0
                                  9-cis-10'-apo-beta-carotenal 0
                                  apo carotenoid C25 terpenoid + 0
                                  apo carotenoid C35 terpenoid + 0
                                  apo carotenoid diterpenoid + 0
                                  apo carotenoid monoterpenoid + 43
                                  apo carotenoid sesquiterpenoid + 1
                                  apo carotenoid triterpenoid + 76
                                  bixin dialdehyde 0
                                  citranaxanthin 0
                                  rosafluine 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.