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ONTOLOGY REPORT - ANNOTATIONS


Term:acridine orange
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Accession:CHEBI:51739 term browser browse the term
Definition:Fluorescent dye useful for cell cycle determination. It is cell-permeable, and interacts with DNA and RNA by intercalation or electrostatic attractions respectively.
Synonyms:exact_synonym: N,N,N',N'-tetramethylacridine-3,6-diamine hydrochloride
 related_synonym: 3,6-Bis(dimethylamino)acridine;   3,6-Bis(dimethylamino)acridine hydrochloride;   C.I. 46005;   Formula=C17H19N3.ClH;   Formula=C17H20ClN3;   InChI=1S/C17H19N3.ClH/c1-19(2)14-7-5-12-9-13-6-8-15(20(3)4)11-17(13)18-16(12)10-14;/h5-11H,1-4H3;1H;   InChIKey=VSTHNGLPHBTRMB-UHFFFAOYSA-N;   N3,N3,N6,N6-tetramethyl-3,6-Acridinediamine hydrochloride(1:1);   Rhoduline Orange;   SMILES=[H+].[Cl-].CN(C)c1ccc2cc3ccc(cc3nc2c1)N(C)C;   basic orange 14
 xref: Beilstein:3575587 "Beilstein";   CAS:494-38-2 "KEGG COMPOUND";   CAS:65-61-2 "ChemIDplus";   KEGG:C19315
 xref_mesh: MESH:D000165
 xref: Wikipedia:Acridine_orange


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acridine orange term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bax BCL2 associated X, apoptosis regulator JBrowse link 1 101,451,801 101,457,207 RGD:6480464
G Gstp1 glutathione S-transferase pi 1 JBrowse link 1 219,291,679 219,294,147 RGD:6480464
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19754
    role 19701
      application 19353
        dye 1279
          histological dye 142
            acridine orange 3
Path 2
Term Annotations click to browse term
  CHEBI ontology 19754
    subatomic particle 19752
      composite particle 19752
        hadron 19752
          baryon 19752
            nucleon 19752
              atomic nucleus 19752
                atom 19752
                  main group element atom 19637
                    p-block element atom 19637
                      carbon group element atom 19528
                        carbon atom 19517
                          organic molecular entity 19517
                            organic molecule 19436
                              organic cyclic compound 19199
                                organic heterocyclic compound 18276
                                  organic heteropolycyclic compound 17583
                                    organic heterotricyclic compound 13744
                                      dibenzopyridine 150
                                        acridines 112
                                          aminoacridines 17
                                            acridine orange cation 3
                                              acridine orange 3
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.