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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:minocycline
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Accession:CHEBI:50694 term browser browse the term
Definition:A tetracycline analogue having a dimethylamino group at position 7 and lacking the methyl and hydroxy groups at position 5.
Synonyms:related_synonym: (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE;   7-Dimethylamino-6-demethyl-6-deoxytetracycline;   Formula=C23H27N3O7;   InChI=1S/C23H27N3O7/c1-25(2)12-5-6-13(27)15-10(12)7-9-8-11-17(26(3)4)19(29)16(22(24)32)21(31)23(11,33)20(30)14(9)18(15)28/h5-6,9,11,17,27,29-30,33H,7-8H2,1-4H3,(H2,24,32)/t9-,11-,17-,23-/m0/s1;   InChIKey=DYKFCLLONBREIL-KVUCHLLUSA-N;   SMILES=[H][C@@]12Cc3c(ccc(O)c3C(=O)C1=C(O)[C@]1(O)C(=O)C(C(N)=O)=C(O)[C@@H](N(C)C)[C@]1([H])C2)N(C)C;   minociclina;   minociclinum;   minomycin
 alt_id: CHEBI:44053;   CHEBI:6939
 xref: Beilstein:3077644;   CAS:10118-90-8;   Chemspider:16735907;   DrugBank:DB01017;   Drug_Central:1813;   HMDB:HMDB0015152;   KEGG:C07225;   KEGG:D05045;   KNApSAcK:C00018686;   LIPID_MAPS_instance:LMPK07000002
 xref_mesh: MESH:D008911
 xref: PDBeChem:MIY;   PMID:22330257;   PMID:28709717;   PMID:31630007;   PMID:31719236;   PMID:31733348;   PMID:33568043;   PMID:34232283;   PMID:34636517;   Patent:US3226436;   Patent:WO2008104734;   Reaxys:3077644
 cyclic_relationship: is_conjugate_acid_of CHEBI:71337;   is_tautomer_of CHEBI:77906



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minocycline term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aif1 allograft inflammatory factor 1 multiple interactions
decreases expression
ISO Minocycline affects the reaction [GPX1 protein affects the expression of AIF1 protein]; Minocycline inhibits the reaction [Methamphetamine results in increased expression of AIF1 protein]; Minocycline inhibits the reaction [Morphine results in increased expression of AIF1 protein]
Minocycline results in decreased expression of AIF1 protein
CTD PMID:32916201 PMID:36682417 PMID:37394652 NCBI chr20:3,646,784...3,652,670
Ensembl chr20:3,646,777...3,652,668
JBrowse link
G Aifm1 apoptosis inducing factor, mitochondria associated 1 multiple interactions
decreases secretion
EXP
ISO
Minocycline inhibits the reaction [HTT protein mutant form results in increased secretion of and results in increased localization of AIFM1 protein]
Minocycline inhibits the reaction [Kainic Acid results in increased localization of AIFM1 protein]
Minocycline results in decreased secretion of AIFM1 protein
CTD PMID:12930891 PMID:16469440 NCBI chr  X:127,650,223...127,689,356
Ensembl chr  X:127,650,226...127,689,256
JBrowse link
G App amyloid beta precursor protein multiple interactions ISO
EXP
Minocycline inhibits the reaction [APP gene mutant form results in increased phosphorylation of EIF2S1 protein]
Minocycline inhibits the reaction [APP protein alternative form results in increased activity of CASP12 protein]; Minocycline inhibits the reaction [APP protein alternative form results in increased phosphorylation of EIF2AK2 protein]; Minocycline inhibits the reaction [APP protein alternative form results in increased phosphorylation of EIF2S1 protein]
CTD PMID:17406652 NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561
JBrowse link
G Atf3 activating transcription factor 3 multiple interactions EXP Minocycline inhibits the reaction [Paclitaxel results in increased expression of ATF3 protein] CTD PMID:21050491 NCBI chr13:102,751,278...102,800,520
Ensembl chr13:102,751,321...102,764,631
JBrowse link
G Atf6 activating transcription factor 6 multiple interactions EXP Minocycline inhibits the reaction [Paraquat results in increased expression of ATF6 protein] CTD PMID:22245251 NCBI chr13:82,927,579...83,106,381
Ensembl chr13:82,930,034...83,107,177
JBrowse link
G Atp5f1a ATP synthase F1 subunit alpha multiple interactions ISO Minocycline inhibits the reaction [[Maneb co-treated with Paraquat] results in decreased expression of ATP5F1A protein] CTD PMID:23562983 NCBI chr18:71,292,406...71,300,342
Ensembl chr18:71,292,374...71,300,794
JBrowse link
G Atp5pd ATP synthase peripheral stalk subunit d multiple interactions EXP Minocycline inhibits the reaction [cypermethrin results in decreased expression of ATP5PD protein] CTD PMID:21561882 NCBI chr10:100,657,700...100,662,960
Ensembl chr10:100,657,708...100,663,479
JBrowse link
G Bace1 beta-secretase 1 multiple interactions ISO Minocycline inhibits the reaction [Copper results in increased expression of BACE1 mRNA] CTD PMID:18583042 NCBI chr 8:46,142,060...46,166,268
Ensembl chr 8:46,142,116...46,165,876
JBrowse link
G Bak1 BCL2-antagonist/killer 1 multiple interactions EXP [Minocycline results in increased expression of BCL2 protein] which binds to BAK1 protein CTD PMID:15004018 NCBI chr20:5,100,480...5,109,669
Ensembl chr20:5,100,480...5,109,264
JBrowse link
G Bax BCL2 associated X, apoptosis regulator multiple interactions
decreases expression
EXP [Minocycline results in increased expression of BCL2 protein] which binds to BAX protein; Minocycline inhibits the reaction [Sodium Azide affects the localization of BAX protein]
Minocycline results in decreased expression of BAX protein
CTD PMID:15004018 PMID:15172883 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Bcl2 BCL2, apoptosis regulator multiple interactions
increases expression
ISO
EXP
[Minocycline co-treated with Hydrogen Peroxide co-treated with TGFB2 protein] results in increased expression of BCL2 mRNA; [Minocycline co-treated with Hydrogen Peroxide co-treated with TGFB2] results in increased expression of BCL2 protein
[Minocycline results in increased expression of BCL2 protein] which binds to BAK1 protein; [Minocycline results in increased expression of BCL2 protein] which binds to BAX protein; [Minocycline results in increased expression of BCL2 protein] which binds to BID protein; Sodium Azide inhibits the reaction [Minocycline results in increased expression of BCL2 protein]
Minocycline results in increased expression of BCL2 mRNA; Minocycline results in increased expression of BCL2 protein
CTD PMID:15004018 PMID:19807907 PMID:20606027 PMID:20711699 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Bid BH3 interacting domain death agonist multiple interactions ISO
EXP
Minocycline results in decreased activity of and results in decreased cleavage of BID protein
[Minocycline results in increased expression of BCL2 protein] which binds to BID protein; Minocycline inhibits the reaction [HTT protein mutant form results in increased cleavage of and results in increased activity of BID protein]
CTD PMID:12930891 PMID:15004018 NCBI chr 4:154,113,198...154,136,353
Ensembl chr 4:154,113,198...154,134,720
JBrowse link
G Casp1 caspase 1 multiple interactions
decreases activity
decreases expression
EXP
ISO
Minocycline inhibits the reaction [HTT protein mutant form results in increased activity of CASP1 protein]
Minocycline results in decreased activity of CASP1 protein
Minocycline results in decreased expression of CASP1 mRNA; Minocycline results in decreased expression of CASP1 protein
CTD PMID:12930891 PMID:14998631 NCBI chr 8:2,587,812...2,597,403
Ensembl chr 8:2,587,831...2,597,383
JBrowse link
G Casp12 caspase 12 multiple interactions
decreases expression
EXP Minocycline inhibits the reaction [APP protein alternative form results in increased activity of CASP12 protein]; Minocycline results in decreased degradation of [Paraquat results in increased expression of CASP12 protein]
Minocycline results in decreased expression of CASP12 mRNA; Minocycline results in decreased expression of CASP12 protein
CTD PMID:14998631 PMID:17406652 PMID:22245251 NCBI chr 8:2,642,296...2,669,549
Ensembl chr 8:2,642,434...2,674,037
JBrowse link
G Casp3 caspase 3 decreases activity
multiple interactions
decreases expression
ISO
EXP
Minocycline results in decreased activity of CASP3 protein
Minocycline inhibits the reaction [Kainic Acid results in increased activity of CASP3 protein]; Minocycline inhibits the reaction [Morphine results in increased cleavage of CASP3 protein]; Minocycline results in decreased activity of and results in decreased cleavage of CASP3 protein
Minocycline inhibits the reaction [HTT protein mutant form results in increased activity of CASP3 protein]; Minocycline inhibits the reaction [Morphine results in increased activity of CASP3 protein]; Minocycline inhibits the reaction [Paraquat results in increased cleavage of CASP3 protein]; Minocycline inhibits the reaction [Sodium Azide results in increased activity of CASP3 protein]; Minocycline results in decreased expression of and results in decreased activity of CASP3 protein
Minocycline results in decreased expression of CASP3 mRNA
Minocycline pretreatment inhibits the reaction [azide increases activity of Casp3 protein in kidney proximal tubular epithelial cells]
CTD
RGD
PMID:12930891 PMID:14588118 PMID:14998631 PMID:15004018 PMID:15304547 More... RGD:1581919 NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648
JBrowse link
G Casp7 caspase 7 decreases expression
multiple interactions
EXP Minocycline results in decreased expression of CASP7 mRNA
Minocycline results in decreased expression of and results in decreased activity of CASP7 protein
CTD PMID:14998631 NCBI chr 1:255,437,438...255,476,737
Ensembl chr 1:255,437,172...255,476,729
JBrowse link
G Casp8 caspase 8 multiple interactions
decreases expression
EXP Minocycline inhibits the reaction [HTT protein mutant form results in increased activity of CASP8 protein]; Minocycline results in decreased expression of and results in decreased activity of CASP8 protein
Minocycline results in decreased expression of CASP8 mRNA
CTD PMID:12930891 PMID:14998631 NCBI chr 9:60,263,863...60,312,542
Ensembl chr 9:60,264,075...60,312,542
JBrowse link
G Casp9 caspase 9 decreases activity
multiple interactions
decreases expression
ISO
EXP
Minocycline results in decreased activity of CASP9 protein
Minocycline inhibits the reaction [HTT protein mutant form results in increased activity of CASP9 protein]; Minocycline results in decreased expression of and results in decreased activity of CASP9 protein
Minocycline results in decreased expression of CASP9 mRNA
CTD PMID:12930891 PMID:14998631 NCBI chr 5:154,108,872...154,126,628
Ensembl chr 5:154,109,046...154,126,626
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 decreases expression
multiple interactions
ISO Minocycline results in decreased expression of CCL2 protein
Minocycline inhibits the reaction [lead acetate results in increased secretion of CCL2 protein]
CTD PMID:20116850 PMID:24530660 NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
JBrowse link
G Ccl3 C-C motif chemokine ligand 3 decreases expression ISO Minocycline results in decreased expression of CCL3 protein CTD PMID:20116850 NCBI chr10:68,451,388...68,452,938
Ensembl chr10:68,451,388...68,452,938
JBrowse link
G Ccl4 C-C motif chemokine ligand 4 decreases expression ISO Minocycline results in decreased expression of CCL4 protein CTD PMID:20116850 NCBI chr10:68,466,394...68,468,229
Ensembl chr10:68,452,052...68,468,231
JBrowse link
G Ccl5 C-C motif chemokine ligand 5 decreases expression ISO Minocycline results in decreased expression of CCL5 protein CTD PMID:20116850 NCBI chr10:68,322,826...68,327,380
Ensembl chr10:68,322,829...68,327,377
JBrowse link
G Cdkn1b cyclin-dependent kinase inhibitor 1B increases expression ISO Minocycline results in increased expression of CDKN1B mRNA; Minocycline results in increased expression of CDKN1B protein CTD PMID:21719015 NCBI chr 4:167,760,067...167,765,177
Ensembl chr 4:167,760,181...167,764,982
JBrowse link
G Cldn5 claudin 5 increases expression EXP minocycline increases expression of claudin-5 protein in left corpus callosum of rats with right carotid artery occlusion RGD PMID:29486300 RGD:27095946 NCBI chr11:82,212,822...82,214,248
Ensembl chr11:82,211,475...82,214,992
JBrowse link
G Cox5a cytochrome c oxidase subunit 5A multiple interactions ISO Minocycline inhibits the reaction [[Maneb co-treated with Paraquat] results in decreased expression of COX5A protein] CTD PMID:23562983 NCBI chr 8:57,922,374...57,933,781
Ensembl chr 8:57,922,290...57,933,781
JBrowse link
G Cycs cytochrome c, somatic multiple interactions
decreases secretion
ISO
EXP
Minocycline inhibits the reaction [Kainic Acid results in increased localization of CYCS protein]
Minocycline results in decreased secretion of CYCS protein
Minocycline inhibits the reaction [Cocaine results in increased secretion of CYCS protein]; Minocycline inhibits the reaction [HTT protein mutant form results in increased secretion of CYCS protein]
CTD PMID:12930891 PMID:14998631 PMID:15172883 PMID:16469440 PMID:21424555 NCBI chr 4:79,651,894...79,653,994
Ensembl chr 4:79,651,378...79,654,054
Ensembl chr18:79,651,378...79,654,054
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 multiple interactions EXP Minocycline inhibits the reaction [Paraquat results in increased expression of DDIT3 protein] CTD PMID:22245251 NCBI chr 7:63,115,645...63,121,203
Ensembl chr 7:63,116,380...63,121,201
JBrowse link
G Diablo diablo, IAP-binding mitochondrial protein decreases secretion
multiple interactions
ISO
EXP
Minocycline results in decreased secretion of DIABLO protein
Minocycline inhibits the reaction [HTT protein mutant form results in increased secretion of DIABLO protein]; Minocycline results in decreased secretion of and results in decreased expression of DIABLO protein
CTD PMID:12930891 PMID:14998631 NCBI chr12:33,055,784...33,070,401
Ensembl chr12:33,055,263...33,070,387
JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase multiple interactions ISO Minocycline inhibits the reaction [[Maneb co-treated with Paraquat] results in increased expression of DLST protein] CTD PMID:23562983 NCBI chr 6:104,758,511...104,783,296
Ensembl chr 6:104,758,631...104,783,296
JBrowse link
G Egln1 egl-9 family hypoxia-inducible factor 1 multiple interactions
increases expression
ISO [[Minocycline promotes the reaction [HIF1A protein binds to VHL protein]] co-treated with [Minocycline results in increased expression of EGLN1 protein]] inhibits the reaction [Oxygen deficiency results in increased stability of HIF1A protein]; [[Minocycline promotes the reaction [HIF1A protein binds to VHL protein]] co-treated with [Minocycline results in increased expression of EGLN1 protein]] results in increased degradation of HIF1A protein CTD PMID:24292262 NCBI chr19:52,867,900...52,907,308
Ensembl chr19:52,869,486...52,907,777
JBrowse link
G Eif2ak2 eukaryotic translation initiation factor 2-alpha kinase 2 multiple interactions EXP Minocycline inhibits the reaction [APP protein alternative form results in increased phosphorylation of EIF2AK2 protein] CTD PMID:17406652 NCBI chr 6:16,189,000...16,224,972
Ensembl chr 6:16,188,979...16,224,971
JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 increases phosphorylation EXP Minocycline results in increased phosphorylation of EIF2AK3 protein CTD PMID:22245251 NCBI chr 4:102,805,495...102,866,914
Ensembl chr 4:102,805,510...102,866,911
JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha multiple interactions
increases phosphorylation
ISO
EXP
Minocycline inhibits the reaction [APP gene mutant form results in increased phosphorylation of EIF2S1 protein]
Minocycline inhibits the reaction [APP protein alternative form results in increased phosphorylation of EIF2S1 protein]
Minocycline results in increased phosphorylation of EIF2S1 protein
CTD PMID:17406652 PMID:22245251 NCBI chr 6:97,672,829...97,697,499
Ensembl chr 6:97,672,766...97,706,225
JBrowse link
G Eno1 enolase 1 multiple interactions ISO Minocycline inhibits the reaction [1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine results in increased expression of ENO1 protein]; Minocycline inhibits the reaction [[Maneb co-treated with Paraquat] results in increased expression of ENO1 protein] CTD PMID:23562983 NCBI chr 5:160,719,951...160,731,337
Ensembl chr 5:160,719,951...160,731,336
JBrowse link
G Ern1 endoplasmic reticulum to nucleus signaling 1 increases phosphorylation EXP Minocycline results in increased phosphorylation of ERN1 protein CTD PMID:22245251 NCBI chr10:91,326,889...91,421,201
Ensembl chr10:91,330,654...91,421,029
JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 multiple interactions ISO Minocycline inhibits the reaction [FMR1 gene mutant form results in increased expression of and results in increased activity of MMP9 protein] CTD PMID:18835858 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050
JBrowse link
G Gjc2 gap junction protein, gamma 2 multiple interactions EXP Minocycline inhibits the reaction [cypermethrin results in increased expression of GJC2 protein modified form] CTD PMID:21561882 NCBI chr10:43,962,642...43,971,358
Ensembl chr10:43,962,642...43,970,467
JBrowse link
G Gpx1 glutathione peroxidase 1 multiple interactions ISO Minocycline affects the reaction [GPX1 protein affects the expression of AIF1 protein]; Minocycline affects the reaction [GPX1 protein affects the phosphorylation of MAPK1 protein]; Minocycline affects the reaction [GPX1 protein affects the phosphorylation of MAPK3 protein] CTD PMID:36682417 NCBI chr 8:109,026,905...109,028,031
Ensembl chr 8:109,026,905...109,028,024
JBrowse link
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 multiple interactions EXP Minocycline inhibits the reaction [Poly C results in increased expression of GRIA1 mRNA] CTD PMID:19660546 NCBI chr10:41,210,713...41,527,283
Ensembl chr10:41,210,713...41,527,283
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A multiple interactions EXP Minocycline inhibits the reaction [Poly C results in increased expression of GRIN2A mRNA] CTD PMID:19660546 NCBI chr10:5,629,683...6,053,262
Ensembl chr10:5,631,369...6,044,637
JBrowse link
G Grin2c glutamate ionotropic receptor NMDA type subunit 2C multiple interactions EXP Minocycline inhibits the reaction [Poly C results in increased expression of GRIN2C mRNA] CTD PMID:19660546 NCBI chr10:100,488,430...100,507,083
Ensembl chr10:100,488,431...100,506,427
JBrowse link
G Gstp1 glutathione S-transferase pi 1 increases expression EXP minocycline increases expression of glutathione S-transferase pi protein in left corpus callosum of rats with right carotid artery occlusion RGD PMID:29486300 RGD:27095946 NCBI chr 1:201,337,762...201,340,230
Ensembl chr 1:201,321,672...201,340,226
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha multiple interactions
increases degradation
ISO [[Minocycline promotes the reaction [HIF1A protein binds to VHL protein]] co-treated with [Minocycline results in increased expression of EGLN1 protein]] inhibits the reaction [Oxygen deficiency results in increased stability of HIF1A protein]; [[Minocycline promotes the reaction [HIF1A protein binds to VHL protein]] co-treated with [Minocycline results in increased expression of EGLN1 protein]] results in increased degradation of HIF1A protein; Minocycline inhibits the reaction [Oxygen deficiency results in increased stability of HIF1A protein]; Minocycline promotes the reaction [HIF1A protein binds to VHL protein]
Minocycline results in increased degradation of HIF1A protein
CTD PMID:24292262 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Hp haptoglobin increases expression EXP minocycline increases expression of zonulin protein in left corpus callosum of rats with right carotid artery occlusion RGD PMID:29486300 RGD:27095946 NCBI chr19:37,539,626...37,544,178
Ensembl chr19:37,539,627...37,544,523
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 multiple interactions EXP Minocycline inhibits the reaction [Paraquat results in increased expression of HSPA5 protein] CTD PMID:22245251 NCBI chr 3:18,055,507...18,059,969
Ensembl chr 3:18,055,405...18,059,891
JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 multiple interactions EXP Minocycline inhibits the reaction [cypermethrin results in increased expression of HSPD1 protein] CTD PMID:21561882 NCBI chr 9:56,579,195...56,590,011
Ensembl chr 9:56,579,201...56,589,662
JBrowse link
G Htt huntingtin multiple interactions EXP Minocycline inhibits the reaction [HTT protein mutant form results in increased activity of CASP1 protein]; Minocycline inhibits the reaction [HTT protein mutant form results in increased activity of CASP3 protein]; Minocycline inhibits the reaction [HTT protein mutant form results in increased activity of CASP8 protein]; Minocycline inhibits the reaction [HTT protein mutant form results in increased activity of CASP9 protein]; Minocycline inhibits the reaction [HTT protein mutant form results in increased cleavage of and results in increased activity of BID protein]; Minocycline inhibits the reaction [HTT protein mutant form results in increased secretion of and results in increased localization of AIFM1 protein]; Minocycline inhibits the reaction [HTT protein mutant form results in increased secretion of CYCS protein]; Minocycline inhibits the reaction [HTT protein mutant form results in increased secretion of DIABLO protein] CTD PMID:12930891 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070
JBrowse link
G Icam1 intercellular adhesion molecule 1 decreases expression EXP Minocycline results in decreased expression of ICAM1 protein CTD PMID:15172883 NCBI chr 8:19,553,063...19,565,438
Ensembl chr 8:19,553,645...19,565,438
JBrowse link
G Ifng interferon gamma multiple interactions ISO Minocycline inhibits the reaction [Trinitrobenzenesulfonic Acid results in increased expression of IFNG mRNA]
[Minocycline co-treated with Ionomycin co-treated with Tetradecanoylphorbol Acetate] results in decreased expression of IFNG mRNA
CTD PMID:19285099 PMID:29594315 NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375
JBrowse link
G Il10 interleukin 10 multiple interactions
increases expression
ISO
EXP
Minocycline promotes the reaction [Lipopolysaccharides results in increased expression of IL10 mRNA]
Minocycline results in increased expression of IL10 mRNA
CTD PMID:14588118 PMID:22024136 NCBI chr13:42,472,625...42,477,308
Ensembl chr13:42,472,839...42,477,313
JBrowse link
G Il1b interleukin 1 beta multiple interactions
affects secretion
ISO
EXP
Minocycline inhibits the reaction [Cisplatin results in increased expression of IL1B mRNA]; Minocycline inhibits the reaction [Dextran Sulfate results in increased expression of IL1B mRNA]; Minocycline inhibits the reaction [Lipopolysaccharides results in increased expression of IL1B mRNA]; Minocycline inhibits the reaction [Morphine results in increased expression of IL1B protein]; Minocycline inhibits the reaction [T-2 Toxin results in increased expression of IL1B mRNA]
Minocycline affects the secretion of IL1B protein
Minocycline inhibits the reaction [Kainic Acid results in increased secretion of IL1B protein]; Minocycline inhibits the reaction [lead acetate results in increased secretion of IL1B protein]; Minocycline inhibits the reaction [manganese chloride results in increased expression of IL1B protein]; Minocycline inhibits the reaction [Toluene results in increased expression of IL1B mRNA]
CTD PMID:11306611 PMID:16386803 PMID:18836210 PMID:19285099 PMID:22024136 More... NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415
JBrowse link
G Il2 interleukin 2 multiple interactions ISO [Minocycline co-treated with Ionomycin co-treated with Tetradecanoylphorbol Acetate] results in decreased expression of IL2 mRNA CTD PMID:29594315 NCBI chr 2:120,004,862...120,009,566
Ensembl chr 2:120,004,862...120,009,566
JBrowse link
G Il6 interleukin 6 multiple interactions ISO Minocycline inhibits the reaction [Dextran Sulfate results in increased expression of IL6 mRNA]; Minocycline inhibits the reaction [Dietary Fats results in increased expression of IL6 protein]; Minocycline inhibits the reaction [lead acetate results in increased secretion of IL6 protein]; Minocycline inhibits the reaction [Methamphetamine results in increased secretion of IL6 protein]; Minocycline inhibits the reaction [Morphine results in increased expression of IL6 protein]; Minocycline inhibits the reaction [T-2 Toxin results in increased expression of IL6 mRNA] CTD PMID:19285099 PMID:21719015 PMID:24530660 PMID:32916201 PMID:36775139 More... NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
JBrowse link
G Il6r interleukin 6 receptor decreases expression ISO Minocycline results in decreased expression of IL6R protein modified form CTD PMID:20116850 NCBI chr 2:175,289,157...175,347,719
Ensembl chr 2:175,298,686...175,347,536
JBrowse link
G Ina internexin neuronal intermediate filament protein, alpha multiple interactions EXP Minocycline inhibits the reaction [cypermethrin results in increased expression of INA protein] CTD PMID:21561882 NCBI chr 1:245,896,775...245,908,330
Ensembl chr 1:245,896,775...245,908,330
JBrowse link
G Itgam integrin subunit alpha M multiple interactions ISO Minocycline inhibits the reaction [T-2 Toxin results in increased expression of ITGAM protein] CTD PMID:36775139 NCBI chr 1:182,659,047...182,709,501
Ensembl chr 1:182,659,000...182,709,503
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit multiple interactions ISO Minocycline results in decreased phosphorylation of and results in decreased activity of and results in decreased expression of JUN protein CTD PMID:17872917 NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656
JBrowse link
G Mapk1 mitogen activated protein kinase 1 increases phosphorylation
multiple interactions
ISO Minocycline results in increased phosphorylation of MAPK1 protein
Minocycline affects the reaction [GPX1 protein affects the phosphorylation of MAPK1 protein]
CTD PMID:36682417 NCBI chr11:83,957,813...84,023,629
Ensembl chr11:83,957,813...84,023,616
JBrowse link
G Mapk3 mitogen activated protein kinase 3 multiple interactions
increases phosphorylation
ISO Minocycline affects the reaction [GPX1 protein affects the phosphorylation of MAPK3 protein]
Minocycline results in increased phosphorylation of MAPK3 protein
CTD PMID:36682417 NCBI chr 1:181,366,646...181,372,863
Ensembl chr 1:181,366,637...181,372,863
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 decreases phosphorylation ISO Minocycline results in decreased phosphorylation of MAPK8 protein CTD PMID:17872917 NCBI chr16:8,638,897...8,721,960
Ensembl chr16:8,638,924...8,721,981
JBrowse link
G Mapkapk5 MAPK activated protein kinase 5 multiple interactions EXP Minocycline inhibits the reaction [cypermethrin results in increased expression of MAPKAPK5 protein] CTD PMID:21561882 NCBI chr12:34,993,520...35,013,059
Ensembl chr12:34,994,092...35,013,052
JBrowse link
G Mmp13 matrix metallopeptidase 13 increases expression
multiple interactions
ISO Minocycline results in increased expression of MMP13 mRNA
Minocycline inhibits the reaction [Dextran Sulfate results in increased expression of MMP13 mRNA]
CTD PMID:19285099 PMID:20338993 NCBI chr 8:4,497,960...4,508,239
Ensembl chr 8:4,497,960...4,508,239
JBrowse link
G Mmp2 matrix metallopeptidase 2 decreases expression
decreases activity
multiple interactions
ISO
EXP
Minocycline results in decreased expression of MMP2 protein
Minocycline results in decreased activity of MMP2 protein
Minocycline inhibits the reaction [Dextran Sulfate results in increased expression of MMP2 mRNA]; Minocycline inhibits the reaction [Dextran Sulfate results in increased expression of MMP2 protein]
Minocycline inhibits the reaction [Oxygen deficiency results in increased expression of MMP2 mRNA]
CTD PMID:11835378 PMID:14508231 PMID:16846501 PMID:19285099 PMID:24292262 NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870
JBrowse link
G Mmp3 matrix metallopeptidase 3 multiple interactions ISO Minocycline inhibits the reaction [Dextran Sulfate results in increased expression of MMP3 mRNA] CTD PMID:19285099 NCBI chr 8:4,640,397...4,653,963
Ensembl chr 8:4,640,416...4,653,961
JBrowse link
G Mmp9 matrix metallopeptidase 9 multiple interactions
decreases expression
decreases activity
ISO
EXP
Minocycline inhibits the reaction [Dextran Sulfate results in increased expression of MMP9 mRNA]; Minocycline inhibits the reaction [Dextran Sulfate results in increased expression of MMP9 protein]; Minocycline inhibits the reaction [FMR1 gene mutant form results in increased expression of and results in increased activity of MMP9 protein]
Minocycline results in decreased expression of MMP9 protein
Minocycline results in decreased activity of MMP9 protein
CTD PMID:16846501 PMID:18835858 PMID:19285099 NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120
JBrowse link
G Mr1 major histocompatibility complex, class I-related affects expression ISO Minocycline affects the expression of MR1 mRNA CTD PMID:25811541 NCBI chr13:67,298,362...67,317,985
Ensembl chr13:67,299,585...67,317,970
JBrowse link
G Nlrp3 NLR family, pyrin domain containing 3 multiple interactions ISO Minocycline inhibits the reaction [Morphine results in increased expression of NLRP3 protein] CTD PMID:37394652 NCBI chr10:44,326,770...44,353,814
Ensembl chr10:44,328,566...44,352,811
JBrowse link
G Nos2 nitric oxide synthase 2 multiple interactions ISO
EXP
Minocycline inhibits the reaction [Dextran Sulfate results in increased expression of NOS2 mRNA]; Minocycline inhibits the reaction [Dextran Sulfate results in increased expression of NOS2 protein]; Minocycline inhibits the reaction [Morphine results in increased expression of NOS2 protein]; Minocycline inhibits the reaction [Trinitrobenzenesulfonic Acid results in increased expression of NOS2 mRNA]
Minocycline inhibits the reaction [lead acetate results in increased expression of NOS2 protein]; Minocycline inhibits the reaction [Lipopolysaccharides results in increased expression of NOS2 mRNA]; Minocycline inhibits the reaction [Lipopolysaccharides results in increased expression of NOS2 protein]; Minocycline inhibits the reaction [manganese chloride results in increased expression of NOS2 protein]
CTD PMID:15485488 PMID:18836210 PMID:19285099 PMID:22952811 PMID:37394652 NCBI chr10:63,815,308...63,851,208
Ensembl chr10:63,815,308...63,851,210
JBrowse link
G Ocln occludin increases expression EXP minocycline increases expression of occludin protein in left corpus callosum of rats with right carotid artery occlusion RGD PMID:29486300 RGD:27095946 NCBI chr 2:31,657,217...31,707,466
Ensembl chr 2:31,657,220...31,764,150
JBrowse link
G Pafah1b2 platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 multiple interactions EXP Minocycline inhibits the reaction [cypermethrin results in decreased expression of PAFAH1B2 protein] CTD PMID:21561882 NCBI chr 8:46,260,069...46,312,073
Ensembl chr 8:46,261,064...46,279,833
JBrowse link
G Prdx2 peroxiredoxin 2 multiple interactions ISO Minocycline inhibits the reaction [1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine results in decreased expression of PRDX2 protein] CTD PMID:23562983 NCBI chr19:23,180,927...23,186,217
Ensembl chr19:23,180,930...23,186,194
JBrowse link
G Prdx3 peroxiredoxin 3 multiple interactions ISO Minocycline inhibits the reaction [1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine results in decreased expression of PRDX3 protein]; Minocycline inhibits the reaction [[Maneb co-treated with Paraquat] results in decreased expression of PRDX3 protein] CTD PMID:23562983 NCBI chr 1:260,001,642...260,014,064
Ensembl chr 1:260,001,637...260,014,111
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase multiple interactions ISO Minocycline inhibits the reaction [PRKN gene mutant form results in increased susceptibility to Rotenone] CTD PMID:16573651 NCBI chr 1:48,688,651...49,882,520
Ensembl chr 1:48,690,556...49,882,555
JBrowse link
G Prtn3 proteinase 3 increases expression ISO Minocycline results in increased expression of PRTN3 protein CTD PMID:12900849 NCBI chr 7:9,822,123...9,831,300
Ensembl chr 7:9,822,122...9,831,944
JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 multiple interactions EXP Minocycline inhibits the reaction [Morphine results in increased expression of PTGS1 mRNA] CTD PMID:18706994 NCBI chr 3:19,584,015...19,605,589
Ensembl chr 3:19,584,015...19,605,586
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 multiple interactions ISO Minocycline inhibits the reaction [Cisplatin results in increased expression of PTGS2 mRNA]; Minocycline inhibits the reaction [Morphine results in increased expression of PTGS2 protein]; Minocycline inhibits the reaction [T-2 Toxin results in increased expression of PTGS2 mRNA]; Minocycline inhibits the reaction [T-2 Toxin results in increased expression of PTGS2 protein] CTD PMID:36775139 PMID:37394652 PMID:37769865 NCBI chr13:62,163,936...62,172,193
Ensembl chr13:62,163,932...62,172,188
JBrowse link
G Pycard PYD and CARD domain containing multiple interactions ISO Minocycline inhibits the reaction [Morphine results in increased expression of PYCARD protein] CTD PMID:37394652 NCBI chr 1:182,601,657...182,603,013
Ensembl chr 1:182,601,174...182,602,955
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit affects expression ISO Minocycline affects the expression of RELA protein CTD PMID:17898303 NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484
JBrowse link
G RT1-CE16 RT1 class I, locus CE16 affects expression ISO Minocycline affects the expression of HLA-A mRNA CTD PMID:25811541 NCBI chr20:3,257,109...3,260,747
Ensembl chr20:3,257,123...3,279,563
JBrowse link
G RT1-CE5 RT1 class I, locus CE5 affects expression ISO Minocycline affects the expression of HLA-F mRNA CTD PMID:25811541 NCBI chr20:3,403,418...3,479,476 JBrowse link
G Slc22a6 solute carrier family 22 member 6 multiple interactions ISO Minocycline inhibits the reaction [SLC22A6 protein results in increased uptake of Anions] CTD PMID:11855680 NCBI chr 1:205,522,579...205,531,179
Ensembl chr 1:205,522,729...205,531,173
JBrowse link
G Slc22a7 solute carrier family 22 member 7 multiple interactions ISO Minocycline inhibits the reaction [SLC22A7 protein results in increased uptake of Anions] CTD PMID:11855680 NCBI chr 9:14,547,073...14,554,354
Ensembl chr 9:14,547,849...14,553,921
JBrowse link
G Slc2a1 solute carrier family 2 member 1 multiple interactions ISO Minocycline inhibits the reaction [Oxygen deficiency results in increased expression of SLC2A1 mRNA] CTD PMID:24292262 NCBI chr 5:132,717,196...132,745,416
Ensembl chr 5:132,717,196...132,745,416
JBrowse link
G Slc6a3 solute carrier family 6 member 3 multiple interactions ISO Minocycline inhibits the reaction [Methamphetamine results in decreased expression of SLC6A3 protein] CTD PMID:16839653 NCBI chr 1:29,709,443...29,750,413
Ensembl chr 1:29,709,443...29,750,413
JBrowse link
G Snap25 synaptosome associated protein 25 multiple interactions EXP Minocycline inhibits the reaction [cypermethrin results in decreased expression of SNAP25 protein] CTD PMID:21561882 NCBI chr 3:124,041,898...124,123,761
Ensembl chr 3:124,041,898...124,123,760
JBrowse link
G Sod2 superoxide dismutase 2 multiple interactions ISO Minocycline inhibits the reaction [[Maneb co-treated with Paraquat] results in decreased expression of SOD2 protein] CTD PMID:23562983 NCBI chr 1:47,638,318...47,645,163
Ensembl chr 1:47,636,528...47,645,189
JBrowse link
G Stmn1 stathmin 1 multiple interactions EXP
ISO
Minocycline inhibits the reaction [cypermethrin results in decreased expression of STMN1 protein]
Minocycline inhibits the reaction [[Maneb co-treated with Paraquat] results in decreased expression of STMN1 protein]
CTD PMID:21561882 PMID:23562983 NCBI chr 5:146,680,757...146,687,154
Ensembl chr 5:146,681,436...146,687,154
JBrowse link
G Tgfb1 transforming growth factor, beta 1 increases expression
multiple interactions
EXP Minocycline results in increased expression of TGFB1 mRNA
Minocycline inhibits the reaction [Toluene results in decreased expression of TGFB1 mRNA]
CTD PMID:32234516 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tgfb2 transforming growth factor, beta 2 multiple interactions ISO [Minocycline co-treated with Hydrogen Peroxide co-treated with TGFB2 protein] results in increased expression of BCL2 mRNA; [Minocycline co-treated with Hydrogen Peroxide co-treated with TGFB2] results in increased expression of BCL2 protein; [Minocycline co-treated with Hydrogen Peroxide co-treated with TGFB2] results in increased expression of XIAP mRNA; [Minocycline co-treated with Hydrogen Peroxide co-treated with TGFB2] results in increased expression of XIAP protein CTD PMID:20606027 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Tnf tumor necrosis factor multiple interactions
decreases expression
EXP
ISO
Minocycline inhibits the reaction [lead acetate results in increased secretion of TNF protein]; Minocycline inhibits the reaction [Lipopolysaccharides results in increased expression of TNF mRNA]; Minocycline inhibits the reaction [manganese chloride results in increased expression of TNF protein]
Minocycline results in decreased expression of TNF mRNA
Minocycline inhibits the reaction [Cisplatin results in increased expression of TNF mRNA]; Minocycline inhibits the reaction [Dextran Sulfate results in increased expression of TNF mRNA]; Minocycline inhibits the reaction [Dietary Fats results in increased expression of TNF protein]; Minocycline inhibits the reaction [lead acetate results in increased secretion of TNF protein]; Minocycline inhibits the reaction [Methamphetamine results in increased secretion of TNF protein]; Minocycline inhibits the reaction [Morphine results in increased expression of TNF protein]; Minocycline inhibits the reaction [T-2 Toxin results in increased expression of TNF mRNA]; Minocycline inhibits the reaction [Trinitrobenzenesulfonic Acid results in increased expression of TNF mRNA]
CTD PMID:14588118 PMID:15485488 PMID:18836210 PMID:19285099 PMID:21719015 More... NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link
G Tp53 tumor protein p53 decreases expression EXP Minocycline results in decreased expression of TP53 protein CTD PMID:15172883 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Tpo thyroid peroxidase decreases activity EXP Minocycline results in decreased activity of TPO protein CTD PMID:26884060 NCBI chr 6:46,698,402...46,768,199
Ensembl chr 6:46,698,414...46,768,199
JBrowse link
G Tuba1a tubulin, alpha 1A multiple interactions ISO Minocycline inhibits the reaction [[Maneb co-treated with Paraquat] results in increased expression of TUBA1A protein] CTD PMID:23562983 NCBI chr 7:130,113,214...130,116,880
Ensembl chr 7:130,081,032...130,196,186
JBrowse link
G Vegfa vascular endothelial growth factor A decreases expression ISO Minocycline results in decreased expression of VEGFA protein CTD PMID:20116850 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
G Vegfc vascular endothelial growth factor C multiple interactions ISO Minocycline inhibits the reaction [Oxygen deficiency results in increased expression of VEGFC mRNA] CTD PMID:24292262 NCBI chr16:37,712,251...37,827,845
Ensembl chr16:37,712,262...37,827,848
JBrowse link
G Vegfd vascular endothelial growth factor D multiple interactions ISO Minocycline inhibits the reaction [Oxygen deficiency results in increased expression of VEGFD mRNA] CTD PMID:24292262 NCBI chr  X:30,073,122...30,108,413
Ensembl chr  X:30,074,163...30,108,295
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor multiple interactions ISO [[Minocycline promotes the reaction [HIF1A protein binds to VHL protein]] co-treated with [Minocycline results in increased expression of EGLN1 protein]] inhibits the reaction [Oxygen deficiency results in increased stability of HIF1A protein]; [[Minocycline promotes the reaction [HIF1A protein binds to VHL protein]] co-treated with [Minocycline results in increased expression of EGLN1 protein]] results in increased degradation of HIF1A protein; Minocycline promotes the reaction [HIF1A protein binds to VHL protein] CTD PMID:24292262 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
JBrowse link
G Xbp1 X-box binding protein 1 multiple interactions EXP Minocycline inhibits the reaction [Paraquat results in increased expression of XBP1 protein] CTD PMID:22245251 NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693
JBrowse link
G Xiap X-linked inhibitor of apoptosis increases expression
multiple interactions
EXP
ISO
Minocycline results in increased expression of XIAP protein
[Minocycline co-treated with Hydrogen Peroxide co-treated with TGFB2] results in increased expression of XIAP mRNA; [Minocycline co-treated with Hydrogen Peroxide co-treated with TGFB2] results in increased expression of XIAP protein
CTD PMID:14998631 PMID:20606027 NCBI chr  X:120,890,537...120,938,413
Ensembl chr  X:120,897,907...120,934,700
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19918
    role 19894
      biological role 19892
        antimicrobial agent 18166
          tetracenomycin 99
            minocycline 99
              minocycline hydrochloride 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19918
    subatomic particle 19916
      composite particle 19916
        hadron 19916
          baryon 19916
            nucleon 19916
              atomic nucleus 19916
                atom 19916
                  main group element atom 19866
                    p-block element atom 19866
                      carbon group element atom 19811
                        carbon atom 19806
                          organic molecular entity 19806
                            organic group 18995
                              organic divalent group 18969
                                organodiyl group 18969
                                  carbonyl group 18922
                                    carbonyl compound 18922
                                      ketone 17210
                                        oxyketone 8903
                                          alpha-oxyketone 8903
                                            alpha-hydroxy ketone 8903
                                              tertiary alpha-hydroxy ketone 8610
                                                minocycline 99
                                                  minocycline hydrochloride 0
paths to the root