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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:all-trans-acitretin
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Accession:CHEBI:50173 term browser browse the term
Definition:An acitretin that has formula C21H26O3.
Synonyms:exact_synonym: (2E,4E,6E,8E)-9-(4-methoxy-2,3,6-trimethylphenyl)-3,7-dimethylnona-2,4,6,8-tetraenoic acid
 related_synonym: (all-E)-9-(4-Methoxy-2,3,6-trimethylphenyl)-3,7-dimethyl-2,4,6,8-nonatetraenoic acid;   Acitretina;   Acitretine;   Acitretinum;   Etretin;   Formula=C21H26O3;   InChI=1S/C21H26O3/c1-14(8-7-9-15(2)12-21(22)23)10-11-19-16(3)13-20(24-6)18(5)17(19)4/h7-13H,1-6H3,(H,22,23)/b9-7+,11-10+,14-8+,15-12+;   InChIKey=IHUNBGSDBOWDMA-AQFIFDHZSA-N;   Neotigason;   SMILES=COc1cc(C)c(\\C=C\\C(C)=C\\C=C\\C(C)=C\\C(O)=O)c(C)c1C;   Soriatane;   acitretin;   all-trans-3,7-Dimethyl-9-(4-methoxy-2,3,6-trimethylphenyl)-2,4,6,8-nonatetraenoic acid
 xref: Beilstein:2458933;   CAS:55079-83-9;   DrugBank:DB00459;   Drug_Central:78;   KEGG:D02754
 xref_mesh: MESH:D017255
 xref: Patent:DE2414619;   Patent:US4105681;   Wikipedia:Acitretin


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all-trans-acitretin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator increases expression ISO Acitretin results in increased expression of BAX protein CTD PMID:16109552 PMID:16196285 NCBI chr 1:101,451,801...101,457,207
Ensembl chr 1:101,451,802...101,457,207
JBrowse link
G Bcl2 BCL2, apoptosis regulator decreases expression ISO Acitretin results in decreased expression of BCL2 protein CTD PMID:16109552 PMID:16196285 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Casp3 caspase 3 increases activity ISO Acitretin results in increased activity of CASP3 protein CTD PMID:16196285 PMID:18624760 NCBI chr16:48,845,011...48,863,249
Ensembl chr16:48,845,012...48,863,204
JBrowse link
G Casp8 caspase 8 increases activity ISO Acitretin results in increased activity of CASP8 protein CTD PMID:18624760 NCBI chr 9:65,614,142...65,662,624
Ensembl chr 9:65,614,142...65,662,106
JBrowse link
G Casp9 caspase 9 increases activity ISO Acitretin results in increased activity of CASP9 protein CTD PMID:18624760 NCBI chr 5:160,356,211...160,373,774
Ensembl chr 5:160,355,833...160,373,778
JBrowse link
G Ccnd1 cyclin D1 decreases expression ISO Acitretin results in decreased expression of CCND1 mRNA; Acitretin results in decreased expression of CCND1 protein CTD PMID:16610086 NCBI chr 1:218,090,750...218,100,447
Ensembl chr 1:218,090,750...218,100,325
JBrowse link
G Fadd Fas associated via death domain increases expression ISO Acitretin results in increased expression of FADD CTD PMID:18624760 NCBI chr 1:217,746,176...217,748,581
Ensembl chr 1:217,742,929...217,748,628
JBrowse link
G Fas Fas cell surface death receptor increases expression ISO Acitretin results in increased expression of FAS CTD PMID:18624760 NCBI chr 1:252,589,785...252,624,790
Ensembl chr 1:252,589,785...252,624,790
JBrowse link
G Faslg Fas ligand increases expression ISO Acitretin results in increased expression of FASLG CTD PMID:18624760 NCBI chr13:79,696,811...79,717,581
Ensembl chr13:79,698,445...79,705,705
JBrowse link
G Mapk1 mitogen activated protein kinase 1 decreases expression ISO Acitretin results in decreased expression of MAPK1 mRNA CTD PMID:16610086 NCBI chr11:88,203,863...88,273,301
Ensembl chr11:88,211,599...88,273,254
JBrowse link
G Mapk3 mitogen activated protein kinase 3 decreases expression ISO Acitretin results in decreased expression of MAPK3 mRNA CTD PMID:16610086 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975
JBrowse link
G Ncoa2 nuclear receptor coactivator 2 multiple interactions ISO Acitretin promotes the reaction [THRB protein binds to NCOA2 protein] CTD PMID:31566444 NCBI chr 5:5,466,544...5,696,540
Ensembl chr 5:5,616,483...5,694,598
JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 increases activity ISO Acitretin results in increased activity of PARP1 protein CTD PMID:18624760 NCBI chr13:98,857,255...98,889,444
Ensembl chr13:98,857,177...98,889,716
JBrowse link
G Rxra retinoid X receptor alpha affects binding ISO Acitretin binds to RXRA protein CTD PMID:31566444 NCBI chr 3:6,272,560...6,295,354
Ensembl chr 3:6,211,789...6,295,908
JBrowse link
G Slc25a5 solute carrier family 25 member 5 decreases expression EXP Acitretin results in decreased expression of SLC25A5 protein CTD PMID:23384448 NCBI chr  X:123,404,570...123,407,637
Ensembl chr  X:123,404,518...123,407,645
JBrowse link
G Stat3 signal transducer and activator of transcription 3 decreases expression ISO Acitretin results in decreased expression of STAT3 mRNA; Acitretin results in decreased expression of STAT3 protein; Acitretin results in decreased expression of STAT3 protein modified form CTD PMID:16610086 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
G Thrb thyroid hormone receptor beta multiple interactions ISO Acitretin promotes the reaction [THRB protein binds to NCOA2 protein] CTD PMID:31566444 NCBI chr15:8,890,578...9,239,815
Ensembl chr15:8,890,578...9,086,282
JBrowse link

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                all-trans-acitretin 17
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  CHEBI ontology 19761
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                    main group molecular entity 19653
                      s-block molecular entity 19418
                        hydrogen molecular entity 19411
                          hydrides 18751
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                              organic fundamental parent 18352
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                                    terpenoid 12165
                                      diterpenoid 11400
                                        retinoid 7879
                                          acitretin 17
                                            all-trans-acitretin 17
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