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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:phytane
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Accession:CHEBI:48937 term browser browse the term
Definition:A diterpene that has formula C20H42.
Synonyms:exact_synonym: 2,6,10,14-tetramethylhexadecane
 related_synonym: Formula=C20H42;   InChI=1S/C20H42/c1-7-18(4)12-9-14-20(6)16-10-15-19(5)13-8-11-17(2)3/h17-20H,7-16H2,1-6H3;   InChIKey=GGYKPYDKXLHNTI-UHFFFAOYSA-N;   Phytan;   SMILES=CCC(C)CCCC(C)CCCC(C)CCCC(C)C
 xref: Beilstein:1744639;   CAS:638-36-8


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2-hydroxyphytanic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rxra retinoid X receptor alpha affects binding ISO 2-hydroxyphytanic acid binds to RXRA protein CTD PMID:23843199 NCBI chr 3:6,272,560...6,295,354
Ensembl chr 3:6,211,789...6,295,908
JBrowse link
G Rxrb retinoid X receptor beta affects binding ISO 2-hydroxyphytanic acid binds to RXRB protein CTD PMID:23843199 NCBI chr20:3,822,673...3,829,138
Ensembl chr20:3,823,042...3,829,140
JBrowse link
G Rxrg retinoid X receptor gamma affects binding ISO 2-hydroxyphytanic acid binds to RXRG protein CTD PMID:23843199 NCBI chr13:85,818,473...85,868,555
Ensembl chr13:85,818,427...85,868,552
JBrowse link
phytanic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fabp1 fatty acid binding protein 1 affects binding
multiple interactions
increases expression
ISO Phytanic Acid binds to FABP1 protein
PPARA protein affects the reaction [Phytanic Acid results in increased expression of FABP1 mRNA]
Phytanic Acid results in increased expression of FABP1 mRNA; Phytanic Acid results in increased expression of FABP1 protein
CTD PMID:10191295 NCBI chr 4:99,063,181...99,066,957
Ensembl chr 4:99,063,181...99,066,954
JBrowse link
G Ppara peroxisome proliferator activated receptor alpha multiple interactions
affects binding
ISO PPARA protein affects the reaction [Phytanic Acid results in increased expression of FABP1 mRNA]
Phytanic Acid binds to PPARA protein
CTD PMID:10191295, PMID:23843199 NCBI chr 7:126,618,872...126,687,282
Ensembl chr 7:126,619,196...126,681,752
JBrowse link
G Ppard peroxisome proliferator-activated receptor delta affects binding ISO Phytanic Acid binds to PPARB protein CTD PMID:23843199 NCBI chr20:7,818,289...7,883,482
Ensembl chr20:7,818,289...7,885,333
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma affects binding ISO Phytanic Acid binds to PPARG protein CTD PMID:23843199 NCBI chr 4:147,274,055...147,399,383
Ensembl chr 4:147,274,107...147,399,380
JBrowse link
G Rxrb retinoid X receptor beta affects binding ISO Phytanic Acid binds to RXRB protein CTD PMID:11939783 NCBI chr20:3,822,673...3,829,138
Ensembl chr20:3,823,042...3,829,140
JBrowse link
G Scp2 sterol carrier protein 2 affects degradation ISO SCP2 protein affects the degradation of Phytanic Acid CTD PMID:10191295 NCBI chr 5:127,647,934...127,735,703
Ensembl chr 5:127,620,274...127,735,739
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19787
    chemical entity 19787
      atom 19784
        nonmetal atom 19659
          carbon atom 19563
            organic molecular entity 19563
              isoprenoid 9594
                terpene 9594
                  diterpene 8426
                    phytane 8
                      1,11,16-trihydroxy-3,7,11,15-tetramethylhexadecan-4-one + 0
                      omega-hydroxyphytanic acid 0
                      phytanic acid + 8
Path 2
Term Annotations click to browse term
  CHEBI ontology 19787
    subatomic particle 19784
      composite particle 19784
        hadron 19784
          baryon 19784
            nucleon 19784
              atomic nucleus 19784
                atom 19784
                  main group element atom 19672
                    main group molecular entity 19672
                      s-block molecular entity 19430
                        hydrogen molecular entity 19420
                          hydrides 18686
                            organic hydride 18249
                              organic fundamental parent 18249
                                hydrocarbon 17969
                                  terpene 9594
                                    diterpene 8426
                                      phytane 8
                                        1,11,16-trihydroxy-3,7,11,15-tetramethylhexadecan-4-one + 0
                                        omega-hydroxyphytanic acid 0
                                        phytanic acid + 8
paths to the root

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