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ONTOLOGY REPORT - ANNOTATIONS


Term:high-density lipoprotein cholesterol
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Accession:CHEBI:47775 term browser browse the term
Definition:Cholesterol esters and free cholesterol which are contained in or bound to high-density lipoproteins (HDL).
Synonyms:related_synonym: HDL cholesterol;   HDL-C;   alpha-lipoprotein cholesterol
 alt_id: MESH:D008076
 xref_mesh: MESH:D008076


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high-density lipoprotein cholesterol term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca1 ATP-binding cassette, sub-family A (ABC1), member 1 JBrowse link 4 53,030,789 53,159,988 RGD:6480464
G Abcg1 ATP binding cassette subfamily G member 1 JBrowse link 17 31,057,694 31,117,984 RGD:6480464
G Ache acetylcholinesterase JBrowse link 5 137,288,247 137,294,466 RGD:6480464
G Akt1 thymoma viral proto-oncogene 1 JBrowse link 12 112,653,821 112,674,884 RGD:6480464
G Angptl4 angiopoietin-like 4 JBrowse link 17 33,774,900 33,781,575 RGD:6480464
G Apoa1 apolipoprotein A-I JBrowse link 9 46,228,630 46,230,469 RGD:6480464
G Apoa4 apolipoprotein A-IV JBrowse link 9 46,240,844 46,243,458 RGD:6480464
G Apoc3 apolipoprotein C-III JBrowse link 9 46,233,050 46,235,636 RGD:6480464
G Apoe apolipoprotein E JBrowse link 7 19,696,244 19,701,310 RGD:6480464
G Col4a3bp collagen, type IV, alpha 3 (Goodpasture antigen) binding protein JBrowse link 13 96,542,709 96,640,167 RGD:6480464
G Hcar2 hydroxycarboxylic acid receptor 2 JBrowse link 5 123,863,570 123,865,516 RGD:6480464
G Lepr leptin receptor JBrowse link 4 101,717,137 101,815,352 RGD:6480464
G Lipc lipase, hepatic JBrowse link 9 70,798,128 70,952,221 RGD:6480464
G Lpl lipoprotein lipase JBrowse link 8 68,880,555 68,906,932 RGD:6480464
G Mapk1 mitogen-activated protein kinase 1 JBrowse link 16 16,983,382 17,047,453 RGD:6480464
G Mapk3 mitogen-activated protein kinase 3 JBrowse link 7 126,759,626 126,765,816 RGD:6480464
G Mmp9 matrix metallopeptidase 9 JBrowse link 2 164,940,326 164,955,850 RGD:6480464
G Myd88 myeloid differentiation primary response gene 88 JBrowse link 9 119,335,934 119,340,018 RGD:6480464
G Nos3 nitric oxide synthase 3, endothelial cell JBrowse link 5 24,364,816 24,384,474 RGD:6480464
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 JBrowse link 10 89,454,234 89,533,645 RGD:6480464
G Pltp phospholipid transfer protein JBrowse link 2 164,839,518 164,857,708 RGD:6480464
G Pon1 paraoxonase 1 JBrowse link 6 5,168,090 5,193,987 RGD:6480464
G Pon2 paraoxonase 2 JBrowse link 6 5,264,620 5,298,345 RGD:6480464
G Rela v-rel reticuloendotheliosis viral oncogene homolog A (avian) JBrowse link 19 5,637,442 5,648,134 RGD:6480464
G Scarb1 scavenger receptor class B, member 1 JBrowse link 5 125,277,087 125,341,094 RGD:6480464
G Tnf tumor necrosis factor JBrowse link 17 35,199,367 35,202,007 RGD:6480464
G Trib3 tribbles pseudokinase 3 JBrowse link 2 152,337,425 152,344,060 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 21264
    chemical entity 21262
      atom 21260
        nonmetal atom 21104
          carbon atom 20791
            organic molecular entity 20791
              lipid 17698
                steroid 13027
                  cholestanoid 346
                    lipoprotein cholesterol 26
                      high-density lipoprotein cholesterol 26
                        high-density lipoprotein 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 21264
    subatomic particle 21260
      composite particle 21260
        hadron 21260
          baryon 21260
            nucleon 21260
              atomic nucleus 21260
                atom 21260
                  main group element atom 21128
                    p-block element atom 21128
                      carbon group element atom 20901
                        carbon atom 20791
                          organic molecular entity 20791
                            organic molecule 20674
                              organic cyclic compound 20125
                                organic polycyclic compound 16880
                                  steroid 13027
                                    steroid fundamental parent 12639
                                      cholestane 353
                                        cholestanoid 346
                                          lipoprotein cholesterol 26
                                            high-density lipoprotein cholesterol 26
                                              high-density lipoprotein 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.