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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:high-density lipoprotein cholesterol
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Accession:CHEBI:47775 term browser browse the term
Definition:Cholesterol esters and free cholesterol which are contained in or bound to high-density lipoproteins (HDL).
Synonyms:related_synonym: HDL cholesterol;   HDL-C;   alpha-lipoprotein cholesterol
 alt_id: MESH:D008076
 xref_mesh: MESH:D008076



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high-density lipoprotein cholesterol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP-binding cassette, sub-family A member 1 multiple interactions
affects abundance
EXP
ISO
ABCA1 protein promotes the reaction [anacetrapib results in increased export of Cholesterol, HDL]; ABCA1 protein promotes the reaction [Niacin results in increased export of Cholesterol, HDL]
ABCA1 gene polymorphism affects the abundance of Cholesterol, HDL
CTD PMID:16030523 PMID:20448206 NCBI chr 4:53,030,789...53,159,988
Ensembl chr 4:53,030,787...53,159,895
JBrowse link
G Abcg1 ATP binding cassette subfamily G member 1 multiple interactions EXP ABCG1 protein promotes the reaction [anacetrapib results in increased export of Cholesterol, HDL]; ABCG1 protein promotes the reaction [Niacin results in increased export of Cholesterol, HDL] CTD PMID:20448206 NCBI chr17:31,276,668...31,336,958
Ensembl chr17:31,276,649...31,336,962
JBrowse link
G Ache acetylcholinesterase multiple interactions ISO [Pesticides results in decreased expression of ACHE protein] which results in decreased abundance of Cholesterol, HDL CTD PMID:23688862 NCBI chr 5:137,286,516...137,292,728
Ensembl chr 5:137,285,781...137,292,728
JBrowse link
G Akt1 thymoma viral proto-oncogene 1 multiple interactions ISO 2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one inhibits the reaction [[Cholesterol, HDL results in increased phosphorylation of and results in increased activity of AKT1 protein] which results in decreased degradation of NOS3 protein]; 2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one inhibits the reaction [Cholesterol, HDL results in increased phosphorylation of and results in increased activity of AKT1 protein]; [Cholesterol, HDL results in increased phosphorylation of and results in increased activity of AKT1 protein] which results in decreased degradation of NOS3 protein; Cholesterol, HDL results in increased phosphorylation of and results in increased activity of AKT1 protein CTD PMID:12821261 NCBI chr12:112,620,260...112,641,266
Ensembl chr12:112,620,255...112,641,318
JBrowse link
G Angptl4 angiopoietin-like 4 increases abundance ISO ANGPTL4 protein polymorphism results in increased abundance of Cholesterol, HDL CTD PMID:28842503 NCBI chr17:33,993,874...34,000,549
Ensembl chr17:33,992,724...34,000,804
JBrowse link
G Apoa1 apolipoprotein A-I affects binding
multiple interactions
increases abundance
ISO
EXP
PON1 protein binds to [APOA1 protein binds to Cholesterol, HDL]
Fatty Acids, Unsaturated affects the reaction [APOA1 promoter SNP affects the abundance of Cholesterol, HDL]
APOA1 protein inhibits the reaction [Lipopolysaccharides results in decreased abundance of Cholesterol, HDL]
APOA1 protein results in increased abundance of Cholesterol, HDL
CTD PMID:11756058 PMID:16128586 PMID:18332268 PMID:20972769 NCBI chr 9:46,139,928...46,141,767
Ensembl chr 9:46,139,878...46,141,764
JBrowse link
G Apoa4 apolipoprotein A-IV affects abundance ISO APOA4 gene polymorphism affects the abundance of Cholesterol, HDL CTD PMID:16030523 NCBI chr 9:46,152,142...46,154,756
Ensembl chr 9:46,151,994...46,154,757
JBrowse link
G Apoc3 apolipoprotein C-III affects abundance ISO APOC3 gene polymorphism affects the abundance of Cholesterol, HDL CTD PMID:16030523 NCBI chr 9:46,144,348...46,146,934
Ensembl chr 9:46,144,231...46,146,934
JBrowse link
G Apoe apolipoprotein E affects abundance
multiple interactions
increases abundance
ISO
EXP
APOE gene polymorphism affects the abundance of Cholesterol, HDL
[[Air Pollutants results in increased abundance of Particulate Matter] promotes the reaction [APOE protein affects the susceptibility to Dietary Fats]] which affects the abundance of Cholesterol, HDL; [APOE gene mutant form affects the susceptibility to Folic Acid] which results in increased abundance of Cholesterol, HDL analog; [APOE gene mutant form results in increased susceptibility to Dietary Fats] which results in decreased abundance of Cholesterol, HDL; N-butyloxycarbonyl-methionyl-aspartyl-glycyl-cysteinyl-glutamyl-leucine inhibits the reaction [[[Air Pollutants results in increased abundance of Particulate Matter] promotes the reaction [APOE protein affects the susceptibility to Dietary Fats]] which affects the abundance of Cholesterol, HDL]
APOE gene polymorphism results in increased abundance of Cholesterol, HDL
CTD PMID:16030523 PMID:17118406 PMID:17289397 PMID:32853627 PMID:34673409 NCBI chr 7:19,430,169...19,434,326
Ensembl chr 7:19,430,034...19,433,113
JBrowse link
G Cert1 ceramide transporter 1 multiple interactions EXP [Niacin results in decreased expression of and results in decreased activity of CERT1 protein] which results in increased abundance of Cholesterol, HDL CTD PMID:18669886 NCBI chr13:96,679,243...96,782,362
Ensembl chr13:96,679,243...96,776,675
JBrowse link
G Hcar2 hydroxycarboxylic acid receptor 2 decreases abundance EXP HCAR2 protein results in decreased abundance of Cholesterol, HDL CTD PMID:20655299 NCBI chr 5:124,001,633...124,003,579
Ensembl chr 5:124,001,633...124,003,562
JBrowse link
G Lepr leptin receptor affects abundance ISO LEPR polymorphism affects the abundance of Cholesterol, HDL CTD PMID:14625131 NCBI chr 4:101,574,393...101,676,375
Ensembl chr 4:101,574,601...101,672,549
JBrowse link
G Lipc lipase, hepatic multiple interactions
affects abundance
ISO Dietary Fats affects the reaction [LIPC promoter SNP affects the abundance of Cholesterol, HDL]
LIPC gene polymorphism affects the abundance of Cholesterol, HDL; LIPC promoter SNP affects the abundance of Cholesterol, HDL
CTD PMID:12403660 PMID:16030523 NCBI chr 9:70,705,410...70,859,503
Ensembl chr 9:70,705,410...70,859,508
JBrowse link
G Lpl lipoprotein lipase affects abundance ISO LPL gene polymorphism affects the abundance of Cholesterol, HDL CTD PMID:16030523 NCBI chr 8:69,333,207...69,359,584
Ensembl chr 8:69,333,143...69,360,100
JBrowse link
G Mapk1 mitogen-activated protein kinase 1 multiple interactions ISO 2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-one inhibits the reaction [Cholesterol, HDL results in increased phosphorylation of and results in increased activity of MAPK1 protein]; Cholesterol, HDL results in increased phosphorylation of and results in increased activity of MAPK1 protein CTD PMID:12821261 NCBI chr16:16,801,246...16,865,317
Ensembl chr16:16,801,246...16,865,317
JBrowse link
G Mapk3 mitogen-activated protein kinase 3 multiple interactions ISO 2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-one inhibits the reaction [Cholesterol, HDL results in increased phosphorylation of and results in increased activity of MAPK3 protein]; Cholesterol, HDL results in increased phosphorylation of and results in increased activity of MAPK3 protein CTD PMID:12821261 NCBI chr 7:126,358,798...126,364,988
Ensembl chr 7:126,358,773...126,364,991
JBrowse link
G Mmp9 matrix metallopeptidase 9 multiple interactions ISO [Arsenic results in increased expression of and results in increased secretion of MMP9 protein] which results in decreased abundance of Cholesterol, HDL CTD PMID:26637202 NCBI chr 2:164,782,246...164,797,770
Ensembl chr 2:164,782,700...164,797,770
JBrowse link
G Myd88 myeloid differentiation primary response gene 88 multiple interactions ISO Cholesterol, HDL inhibits the reaction [Lipopolysaccharides results in increased expression of MYD88 mRNA] CTD PMID:20972769 NCBI chr 9:119,165,000...119,169,084
Ensembl chr 9:119,165,000...119,170,477
JBrowse link
G Nos3 nitric oxide synthase 3, endothelial cell multiple interactions
decreases degradation
increases expression
ISO 2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-one inhibits the reaction [Cholesterol, HDL results in decreased degradation of NOS3 protein]; 2-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-one inhibits the reaction [[Cholesterol, HDL results in increased phosphorylation of and results in increased activity of AKT1 protein] which results in decreased degradation of NOS3 protein]; [Cholesterol, HDL results in increased phosphorylation of and results in increased activity of AKT1 protein] which results in decreased degradation of NOS3 protein
Cholesterol, HDL results in increased expression of NOS3 protein
CTD PMID:12094204 PMID:12821261 NCBI chr 5:24,569,772...24,589,472
Ensembl chr 5:24,569,808...24,589,472
JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 multiple interactions
increases abundance
EXP Dietary Fats promotes the reaction [NR1H4 gene mutant form results in increased abundance of Cholesterol, HDL] CTD PMID:22540009 NCBI chr10:89,290,096...89,369,484
Ensembl chr10:89,290,096...89,369,447
JBrowse link
G Pltp phospholipid transfer protein affects abundance ISO PLTP protein affects the abundance of Cholesterol, HDL CTD PMID:12754275 NCBI chr 2:164,681,441...164,699,564
Ensembl chr 2:164,681,438...164,699,631
JBrowse link
G Pon1 paraoxonase 1 increases activity
multiple interactions
affects abundance
affects binding
ISO Cholesterol, HDL results in increased activity of PON1 protein
PON1 gene polymorphism affects the reaction [Atorvastatin results in increased abundance of Cholesterol, HDL]; PON1 gene polymorphism affects the reaction [Simvastatin results in increased abundance of Cholesterol, HDL]; PON1 gene SNP affects the reaction [Atorvastatin results in increased abundance of Cholesterol, HDL]; PON1 gene SNP affects the reaction [Simvastatin results in increased abundance of Cholesterol, HDL]; PON1 protein affects the reaction [Atorvastatin results in increased abundance of Cholesterol, HDL]; PON1 protein affects the reaction [Simvastatin results in increased abundance of Cholesterol, HDL]
PON1 gene polymorphism affects the abundance of Cholesterol, HDL; PON1 polymorphism affects the abundance of Cholesterol, HDL
PON1 protein binds to [APOA1 protein binds to Cholesterol, HDL]
CTD PMID:9699900 PMID:16030523 PMID:16128586 PMID:16238680 PMID:23628180 NCBI chr 6:5,168,101...5,193,824
Ensembl chr 6:5,168,090...5,193,946
JBrowse link
G Pon2 paraoxonase 2 affects abundance ISO PON2 gene polymorphism affects the abundance of Cholesterol, HDL CTD PMID:9699900 PMID:16030523 NCBI chr 6:5,264,620...5,298,408
Ensembl chr 6:5,264,147...5,298,455
JBrowse link
G Rela v-rel reticuloendotheliosis viral oncogene homolog A (avian) multiple interactions ISO Cholesterol, HDL inhibits the reaction [Lipopolysaccharides results in increased activity of RELA protein] CTD PMID:20972769 NCBI chr19:5,686,993...5,698,162
Ensembl chr19:5,687,511...5,698,158
JBrowse link
G Scarb1 scavenger receptor class B, member 1 multiple interactions
increases export
ISO
EXP
Niacin promotes the reaction [SCARB1 protein results in increased export of Cholesterol, HDL]
Fenofibrate inhibits the reaction [SCARB1 protein results in increased export of Cholesterol, HDL]; SDZ HDL 376 analog inhibits the reaction [SCARB1 protein results in increased export of Cholesterol, HDL]; SDZ HDL 376 inhibits the reaction [SCARB1 protein results in increased export of Cholesterol, HDL]
CTD PMID:17533223 PMID:21291703 NCBI chr 5:125,354,151...125,418,082
Ensembl chr 5:125,354,151...125,418,158
JBrowse link
G Tnf tumor necrosis factor affects abundance
multiple interactions
ISO TNF gene polymorphism affects the abundance of Cholesterol, HDL
Cholesterol, HDL inhibits the reaction [[lipopolysaccharide, E coli O55-B5 co-treated with Carbon Tetrachloride] results in increased expression of TNF protein]
CTD PMID:15123356 PMID:17823444 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
G Trib3 tribbles pseudokinase 3 affects abundance ISO TRIB3 protein affects the abundance of Cholesterol, HDL CTD PMID:21190014 NCBI chr 2:152,179,345...152,185,980
Ensembl chr 2:152,179,342...152,185,952
JBrowse link
high-density lipoprotein term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itgam integrin alpha M multiple interactions ISO High-density lipoprotein inhibits the reaction [cholesterol increases expression of ITGAM protein on monocytes and granulocytes]
High-density lipoprotein inhibits the reaction [PMA increases expression of ITGAM protein on monocytes]
RGD PMID:26026058 PMID:18617650 RGD:329853768, RGD:329901662 NCBI chr 7:127,661,812...127,717,663
Ensembl chr 7:127,661,812...127,717,663
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 22178
    chemical entity 22208
      atom 22170
        nonmetal atom 22055
          carbon atom 21859
            organic molecular entity 21830
              lipid 18859
                steroid 14869
                  cholestanoid 380
                    lipoprotein cholesterol 33
                      high-density lipoprotein cholesterol 27
                        high-density lipoprotein 1
Path 2
Term Annotations click to browse term
  CHEBI ontology 22178
    subatomic particle 22170
      composite particle 22170
        hadron 22201
          baryon 22170
            nucleon 22170
              atomic nucleus 22170
                atom 22170
                  main group element atom 22104
                    p-block element atom 22104
                      carbon group element atom 21904
                        carbon atom 21859
                          organic molecular entity 21830
                            organic molecule 21647
                              organic cyclic compound 21252
                                organic polycyclic compound 17940
                                  steroid 14869
                                    steroid fundamental parent 14670
                                      cholestane 386
                                        cholestanoid 380
                                          lipoprotein cholesterol 33
                                            high-density lipoprotein cholesterol 27
                                              high-density lipoprotein 1
paths to the root