Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS
Term:xanthene dye
go back to main search page
Accession:CHEBI:37929 term browser browse the term
Definition:A dye derived by condensation of phthalic anhydride with resorcinol (and derivatives) or m-aminophenol (and derivatives).
Synonyms:exact_synonym: xanthene dyes

show annotations for term's descendants       view all columns           Sort by:
 
2',7'-bis-(2-carboxyethyl)carboxyfluorescein term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcc4 ATP binding cassette subfamily C member 4 JBrowse link 15 103,695,415 103,927,980 RGD:6480464
G Abcc5 ATP binding cassette subfamily C member 5 JBrowse link 11 84,395,982 84,490,215 RGD:6480464
5(6)-carboxy-2',7'-dichlorofluorescein term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcc2 ATP binding cassette subfamily C member 2 JBrowse link 1 263,554,426 263,612,556 RGD:6480464
G Abcc3 ATP binding cassette subfamily C member 3 JBrowse link 10 82,047,308 82,116,928 RGD:6480464
G Abcc5 ATP binding cassette subfamily C member 5 JBrowse link 11 84,395,982 84,490,215 RGD:6480464
5-carboxyfluorescein term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slc22a8 solute carrier family 22 member 8 JBrowse link 1 224,799,444 224,818,482 RGD:6480464
5-chloromethylfluorescein diacetate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcc2 ATP binding cassette subfamily C member 2 JBrowse link 1 263,554,426 263,612,556 RGD:6480464
6-carboxyfluorescein term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcc1 ATP binding cassette subfamily C member 1 JBrowse link 10 549,537 672,235 RGD:6480464
G Abcc2 ATP binding cassette subfamily C member 2 JBrowse link 1 263,554,426 263,612,556 RGD:6480464
G Slc22a6 solute carrier family 22 member 6 JBrowse link 1 224,824,809 224,833,284 RGD:6480464
G Slc22a8 solute carrier family 22 member 8 JBrowse link 1 224,799,444 224,818,482 RGD:6480464
calcein term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb1a ATP binding cassette subfamily B member 1A JBrowse link 4 22,339,829 22,517,642 RGD:6480464
G Abcc1 ATP binding cassette subfamily C member 1 JBrowse link 10 549,537 672,235 RGD:6480464
G Abcc2 ATP binding cassette subfamily C member 2 JBrowse link 1 263,554,426 263,612,556 RGD:6480464
G Abcc6 ATP binding cassette subfamily C member 6 JBrowse link 1 101,954,786 102,013,252 RGD:6480464
calcein am term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb11 ATP binding cassette subfamily B member 11 JBrowse link 3 55,480,024 55,587,946 RGD:6480464
G Abcb1a ATP binding cassette subfamily B member 1A JBrowse link 4 22,339,829 22,517,642 RGD:6480464
G Abcc1 ATP binding cassette subfamily C member 1 JBrowse link 10 549,537 672,235 RGD:6480464
G Abcc2 ATP binding cassette subfamily C member 2 JBrowse link 1 263,554,426 263,612,556 RGD:6480464
G Abcc3 ATP binding cassette subfamily C member 3 JBrowse link 10 82,047,308 82,116,928 RGD:6480464
G Abcc4 ATP binding cassette subfamily C member 4 JBrowse link 15 103,695,415 103,927,980 RGD:6480464
G Abcc6 ATP binding cassette subfamily C member 6 JBrowse link 1 101,954,786 102,013,252 RGD:6480464
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:6480464
Fluo-3 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcc1 ATP binding cassette subfamily C member 1 JBrowse link 10 549,537 672,235 RGD:6480464
G Abcc2 ATP binding cassette subfamily C member 2 JBrowse link 1 263,554,426 263,612,556 RGD:6480464
fluorescein term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp2c6v1 cytochrome P450, family 2, subfamily C, polypeptide 6, variant 1 JBrowse link 1 147,713,879 147,814,410 RGD:6480464
G Kcnh2 potassium voltage-gated channel subfamily H member 2 JBrowse link 4 7,355,066 7,387,282 RGD:6480464
G Slc22a6 solute carrier family 22 member 6 JBrowse link 1 224,824,809 224,833,284 RGD:6480464
G Slco1b2 solute carrier organic anion transporter family member 1B2 JBrowse link 4 175,814,118 175,881,775 RGD:6480464
G Slco3a1 solute carrier organic anion transporter family, member 3a1 JBrowse link 1 135,790,854 136,073,640 RGD:6480464
fluorescein 5-isothiocyanate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb7 ATP binding cassette subfamily B member 7 JBrowse link X 75,150,511 75,291,950 RGD:6480464
G Akr1c2 aldo-keto reductase family 1, member C2 JBrowse link 17 69,388,337 69,435,160 RGD:6480464
G Anxa4 annexin A4 JBrowse link 4 118,538,775 118,595,591 RGD:6480464
G Arhgap6 Rho GTPase activating protein 6 JBrowse link X 26,314,561 26,845,242 RGD:6480464
G Azi2 5-azacytidine induced 2 JBrowse link 8 126,411,030 126,435,581 RGD:6480464
G Capzb capping actin protein of muscle Z-line subunit beta JBrowse link 5 157,642,742 157,742,487 RGD:6480464
G Cd109 CD109 molecule JBrowse link 8 85,951,420 86,065,411 RGD:6480464
G Cd180 CD180 molecule JBrowse link 2 32,820,275 32,833,223 RGD:6480464
G Cd86 CD86 molecule JBrowse link 11 67,060,305 67,117,990 RGD:6480464
G Cd93 CD93 molecule JBrowse link 3 142,778,798 142,783,774 RGD:6480464
G Cdc20 cell division cycle 20 JBrowse link 5 137,260,728 137,264,931 RGD:6480464
G Copa COPI coat complex subunit alpha JBrowse link 13 90,467,285 90,508,894 RGD:6480464
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:6480464
G Dcaf4 DDB1 and CUL4 associated factor 4 JBrowse link 6 107,001,763 107,027,466 RGD:6480464
G Dot1l DOT1 like histone lysine methyltransferase JBrowse link 7 11,786,105 11,824,742 RGD:6480464
G Elac1 elaC ribonuclease Z 1 JBrowse link 18 69,706,522 69,723,869 RGD:6480464
G Enpp7 ectonucleotide pyrophosphatase/phosphodiesterase 7 JBrowse link 10 108,095,131 108,099,483 RGD:6480464
G Flrt3 fibronectin leucine rich transmembrane protein 3 JBrowse link 3 134,684,446 134,696,586 RGD:6480464
G Fn1 fibronectin 1 JBrowse link 9 78,900,111 78,969,018 RGD:6480464
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:6480464
G Hspa5 heat shock protein family A (Hsp70) member 5 JBrowse link 3 13,838,304 13,842,763 RGD:6480464
G Hspa9 heat shock protein family A (Hsp70) member 9 JBrowse link 18 27,731,072 27,749,235 RGD:6480464
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:6480464
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta JBrowse link 16 74,177,233 74,230,809 RGD:6480464
G Ikzf4 IKAROS family zinc finger 4 JBrowse link 7 3,061,422 3,098,142 RGD:6480464
G Il17re interleukin 17 receptor E JBrowse link 4 145,413,157 145,426,608 RGD:6480464
G Il31ra interleukin 31 receptor A JBrowse link 2 44,333,347 44,408,005 RGD:6480464
G Il4 interleukin 4 JBrowse link 10 38,963,979 38,969,531 RGD:6480464
G Lypd3 Ly6/Plaur domain containing 3 JBrowse link 1 81,499,856 81,504,306 RGD:6480464
G Maff MAF bZIP transcription factor F JBrowse link 7 120,580,743 120,592,095 RGD:6480464
G Map3k20 mitogen-activated protein kinase kinase kinase 20 JBrowse link 3 58,965,025 59,120,507 RGD:6480464
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:6480464
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:6480464
G Mapk8 mitogen-activated protein kinase 8 JBrowse link 16 9,620,854 9,709,342 RGD:6480464
G Mapk9 mitogen-activated protein kinase 9 JBrowse link 10 35,333,859 35,374,364 RGD:6480464
G Mt2A metallothionein 2A JBrowse link 19 11,307,966 11,308,740 RGD:6480464
G Mybpc1 myosin binding protein C1 JBrowse link 7 29,086,159 29,171,909 RGD:6480464
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:6480464
G Nqo1 NAD(P)H quinone dehydrogenase 1 JBrowse link 19 38,422,210 38,437,103 RGD:6480464
G Plce1 phospholipase C, epsilon 1 JBrowse link 1 257,156,023 257,465,440 RGD:6480464
G Postn periostin JBrowse link 2 143,656,820 143,688,087 RGD:6480464
G Pprc1 PPARG related coactivator 1 JBrowse link 1 265,809,892 265,826,319 RGD:6480464
G Psd4 pleckstrin and Sec7 domain containing 4 JBrowse link 3 1,478,432 1,515,094 RGD:6480464
G Psmd14 proteasome 26S subunit, non-ATPase 14 JBrowse link 3 47,578,449 47,673,330 RGD:6480464
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:6480464
G Scn5a sodium voltage-gated channel alpha subunit 5 JBrowse link 8 128,169,191 128,266,681 RGD:6480464
G Skor1 SKI family transcriptional corepressor 1 JBrowse link 8 68,029,930 68,040,504 RGD:6480464
G Slc38a10 solute carrier family 38, member 10 JBrowse link 10 109,284,054 109,333,907 RGD:6480464
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:6480464
G Stat5a signal transducer and activator of transcription 5A JBrowse link 10 88,764,732 88,789,060 RGD:6480464
G Stat6 signal transducer and activator of transcription 6 JBrowse link 7 70,946,228 70,963,542 RGD:6480464
G Trpa1 transient receptor potential cation channel, subfamily A, member 1 JBrowse link 5 3,783,247 3,836,485 RGD:6480464
G Tslp thymic stromal lymphopoietin JBrowse link 18 25,613,601 25,618,066 RGD:6480464
G Txn1 thioredoxin 1 JBrowse link 5 75,049,735 75,057,731 RGD:6480464
G Usp3 ubiquitin specific peptidase 3 JBrowse link 8 72,207,970 72,284,871 RGD:6480464
gallein term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slc2a4 solute carrier family 2 member 4 JBrowse link 10 56,552,921 56,558,562 RGD:6480464
rhodamine 123 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb1a ATP binding cassette subfamily B member 1A JBrowse link 4 22,339,829 22,517,642 RGD:6480464
G Abcg2 ATP binding cassette subfamily G member 2 JBrowse link 4 88,765,441 88,890,268 RGD:6480464
rose bengal term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb1a ATP binding cassette subfamily B member 1A JBrowse link 4 22,339,829 22,517,642 RGD:6480464
G Cyp19a1 cytochrome P450, family 19, subfamily a, polypeptide 1 JBrowse link 8 58,744,849 58,772,408 RGD:6480464
G Gsta2 glutathione S-transferase alpha 2 JBrowse link 8 85,640,081 85,645,621 RGD:6480464
G Iyd iodotyrosine deiodinase JBrowse link 1 40,086,513 40,100,966 RGD:6480464
G Kcnh2 potassium voltage-gated channel subfamily H member 2 JBrowse link 4 7,355,066 7,387,282 RGD:6480464
G Klkb1 kallikrein B1 JBrowse link 16 50,151,127 50,175,407 RGD:6480464
G Ugt1a6 UDP glucuronosyltransferase family 1 member A6 JBrowse link 9 95,241,609 95,302,822 RGD:6480464
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19779
    role 19727
      application 19373
        dye 1287
          xanthene dye 78
            2',4',5',7'-tetrabromo-2,3,4,5-tetrachlorofluorescein 0
            2',4',5',7'-tetrabromofluorescein 0
            2',7'-bis-(2-carboxyethyl)carboxyfluorescein + 2
            2',7'-difluorofluorescein 0
            2',7'-difluorofluorescein DHPE 0
            2,7-dibromo-4-hydroxymercurifluorescein 0
            5-(N-hexadecanoyl)aminofluorescin 0
            6-carboxyrhodamine 6G 0
            7-glycidyloxy-9-(2-glycidyloxycarbonylphenyl)-2-xanthone 0
            ATTO 520-2 + 0
            ATTO 520-2(1+) + 0
            ATTO 565 meta-isomer(1+) + 0
            ATTO 565 para-isomer(1+) + 0
            ATTO 590 meta-isomer(1+) + 0
            ATTO 590 para-isomer(1+) + 0
            Alexa Fluor 480(3-) + 0
            Alexa Fluor 488 meta-isomer(2-) + 0
            Alexa Fluor 488 para-isomer(2-) + 0
            CHOxAsH-bis(1,2-ethanedithiol) 0
            DAF-FM dye 0
            Fluo-3 2
            Fluo-4 0
            Fluo-4FF 0
            Fluo-5F 0
            Fluo-5N 0
            FluorX + 0
            HOxAsH-bis(1,2-ethanedithiol) 0
            OG-514 dye 0
            QSY21 succinimidyl ester 0
            QSY21 succinimidyl ester(1+) + 0
            QSY7 succinimidyl ester 0
            QSY7 succinimidyl ester(1+) + 0
            QSY9 succinimidyl ester 0
            QSY9 succinimidyl ester(1+) + 0
            acridine red 3B free base 0
            calcein + 8
            calcein am 8
            calcium green 1 0
            calcium green 1(6-) + 0
            calcium orange 0
            carboxynaphthofluorescein + 0
            erythrosin 0
            fluorescein + 66
            fluorescein bis-arsenide 0
            gallein 1
            oregon green 488 0
            resorufin bis-arsenide 0
            rhod-2 dye 0
            rhod-2(1+) + 0
            rhodamine 110 + 0
            rhodamine 110(1+) + 0
            rhodamine 123 2
            rhodamine 123(1+) + 2
            rhodamine 6G + 0
            rhodamine 6G(1+) + 0
            rhodamine B 0
            rhodamine B isothiocyanate + 0
            rhodamine B(1+) + 0
            rhodamine green + 0
            rhodamine red-X 0
            rose bengal 8
            rose bengal free acid 0
            rose bengal(2-) + 8
            sulforhodamine G 0
            sulforhodamine G anion + 0
            tetramethylrhodamine + 0
            tetramethylrhodamine ethyl ester perchlorate 0
            tetramethylrhodamine ethyl ester(1+) + 0
            tetramethylrhodamine phalloidin 0
            tetramethylrhodamine thiocyanate cation + 0
            yakima yellow phosphoramidite 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19779
    subatomic particle 19777
      composite particle 19777
        hadron 19777
          baryon 19777
            nucleon 19777
              atomic nucleus 19777
                atom 19777
                  main group element atom 19664
                    p-block element atom 19664
                      carbon group element atom 19559
                        carbon atom 19548
                          organic molecular entity 19548
                            organic molecule 19472
                              organic cyclic compound 19236
                                organic heterocyclic compound 18361
                                  oxacycle 17134
                                    dibenzopyran 227
                                      xanthenes 224
                                        xanthene dye 78
                                          2',4',5',7'-tetrabromo-2,3,4,5-tetrachlorofluorescein 0
                                          2',4',5',7'-tetrabromofluorescein 0
                                          2',7'-bis-(2-carboxyethyl)carboxyfluorescein + 2
                                          2',7'-difluorofluorescein 0
                                          2',7'-difluorofluorescein DHPE 0
                                          2,7-dibromo-4-hydroxymercurifluorescein 0
                                          5-(N-hexadecanoyl)aminofluorescin 0
                                          6-carboxyrhodamine 6G 0
                                          7-glycidyloxy-9-(2-glycidyloxycarbonylphenyl)-2-xanthone 0
                                          ATTO 520-2 + 0
                                          ATTO 520-2(1+) + 0
                                          ATTO 565 meta-isomer(1+) + 0
                                          ATTO 565 para-isomer(1+) + 0
                                          ATTO 590 meta-isomer(1+) + 0
                                          ATTO 590 para-isomer(1+) + 0
                                          Alexa Fluor 480(3-) + 0
                                          Alexa Fluor 488 meta-isomer(2-) + 0
                                          Alexa Fluor 488 para-isomer(2-) + 0
                                          CHOxAsH-bis(1,2-ethanedithiol) 0
                                          DAF-FM dye 0
                                          Fluo-3 2
                                          Fluo-4 0
                                          Fluo-4FF 0
                                          Fluo-5F 0
                                          Fluo-5N 0
                                          FluorX + 0
                                          HOxAsH-bis(1,2-ethanedithiol) 0
                                          OG-514 dye 0
                                          QSY21 succinimidyl ester 0
                                          QSY21 succinimidyl ester(1+) + 0
                                          QSY7 succinimidyl ester 0
                                          QSY7 succinimidyl ester(1+) + 0
                                          QSY9 succinimidyl ester 0
                                          QSY9 succinimidyl ester(1+) + 0
                                          acridine red 3B free base 0
                                          calcein + 8
                                          calcein am 8
                                          calcium green 1 0
                                          calcium green 1(6-) + 0
                                          calcium orange 0
                                          carboxynaphthofluorescein + 0
                                          erythrosin 0
                                          fluorescein + 66
                                          fluorescein bis-arsenide 0
                                          gallein 1
                                          oregon green 488 0
                                          resorufin bis-arsenide 0
                                          rhod-2 dye 0
                                          rhod-2(1+) + 0
                                          rhodamine 110 + 0
                                          rhodamine 110(1+) + 0
                                          rhodamine 123 2
                                          rhodamine 123(1+) + 2
                                          rhodamine 6G + 0
                                          rhodamine 6G(1+) + 0
                                          rhodamine B 0
                                          rhodamine B isothiocyanate + 0
                                          rhodamine B(1+) + 0
                                          rhodamine green + 0
                                          rhodamine red-X 0
                                          rose bengal 8
                                          rose bengal free acid 0
                                          rose bengal(2-) + 8
                                          sulforhodamine G 0
                                          sulforhodamine G anion + 0
                                          tetramethylrhodamine + 0
                                          tetramethylrhodamine ethyl ester perchlorate 0
                                          tetramethylrhodamine ethyl ester(1+) + 0
                                          tetramethylrhodamine phalloidin 0
                                          tetramethylrhodamine thiocyanate cation + 0
                                          yakima yellow phosphoramidite 0
paths to the root

Contact Us |  About Us |  License CC BY 4.0 |  Legal Disclaimer |  © Medical College of Wisconsin
NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.