Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:pyrimidine 2'-deoxyribonucleoside 5'-monophosphate
go back to main search page
Accession:CHEBI:36995 term browser browse the term
Synonyms:related_synonym: pyrimidine 2'-deoxyribonucleoside 5'-monophosphates


show annotations for term's descendants           Sort by:
 
2'-deoxycytosine 5'-monophosphate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 multiple interactions
increases abundance
ISO Triazines inhibits the reaction [IDH2 protein mutant form results in increased abundance of Deoxycytidine Monophosphate] CTD PMID:27469509 NCBI chr 1:141,874,354...141,893,674
Ensembl chr 1:141,866,283...141,893,705
JBrowse link
dTMP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 multiple interactions
increases abundance
ISO Triazines inhibits the reaction [IDH2 protein mutant form results in increased abundance of Thymidine Monophosphate] CTD PMID:27469509 NCBI chr 1:141,874,354...141,893,674
Ensembl chr 1:141,866,283...141,893,705
JBrowse link
G Tyms thymidylate synthetase multiple interactions ISO [Fluorouracil results in decreased activity of TYMS protein] which results in decreased abundance of Thymidine Monophosphate CTD PMID:29258758 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564
JBrowse link
dUMP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc5 ATP binding cassette subfamily C member 5 increases export ISO ABCC5 protein results in increased export of 2'-deoxyuridylic acid CTD PMID:15897250 NCBI chr11:84,395,982...84,490,215
Ensembl chr11:84,396,033...84,490,211
JBrowse link
G Tyms thymidylate synthetase multiple interactions ISO [Fluorouracil results in decreased activity of TYMS protein] which results in increased abundance of 2'-deoxyuridylic acid CTD PMID:29258758 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19773
    role 19723
      application 19413
        solvent 16539
          phosphoric acid 7952
            phosphoric acid derivative 7632
              organic phosphate 7631
                nucleoside phosphate 1707
                  nucleoside 5'-monophosphate 339
                    2'-deoxyribonucleoside monophosphate 3
                      2'-deoxyribonucleoside 5'-monophosphate 3
                        pyrimidine 2'-deoxyribonucleoside 5'-monophosphate 3
                          (beta-D-glucopyranosyloxymethyl)deoxyuridine 5'-monophosphate + 0
                          1-(2-deoxy-5-O-phosphono-beta-L-ribofuranosyl)thymine 0
                          1-[(3xi,5S)-5-C-amino-2-deoxy-5-O-phosphono-D-glycero-pentofuranosyl]-5-methylpyrimidine-2,4(1H,3H)-dione 0
                          2',3'-dideoxycytidine 5'-monophosphate 0
                          2'-amino-2'-deoxyuridine 5'-(dihydrogen phosphate) 0
                          2'-deoxy-5'-O-[(R)-hydroxy(phosphonoamino)phosphoryl]uridine 0
                          2'-deoxy-5,6-dihydroxy-5,6-dihydrocytidine 5'-monophosphate 0
                          2'-deoxy-5-(4,5-dihydroxypentyl)uridine 5'-monophosphate 0
                          2'-deoxy-5-methyl-5'-cytidylic acid + 0
                          2'-deoxy-5-methylisocytidylic acid 0
                          2'-deoxycytosine 5'-monophosphate + 1
                          2'-deoxyzebularine 5'-phosphate 0
                          2-deoxy-5-O-phosphono-beta-L-ribofuranosylcytosine 0
                          5'-O-[(S)-\{[6-(\{[6-(\{6-[(6-carbamoyl-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-2-yl)carbonyl]-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-2-yl\}carbonyl)-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-2-yl]carbonyl\}amino)hexyl]oxy\}(hydroxy)phosphoryl]thymidine 0
                          5,6-dihydrothymidine 5'-monophosphate 0
                          5,6-dihydroxy-2'-deoxyuridine 5'-monophosphate 0
                          5-carboxy-2'-deoxyuridine 5'-monophosphate 0
                          5-fluorodeoxyuridine monophosphate 0
                          5-hydroxymethyldeoxycytidylic acid + 0
                          N(4)-[4-(aminomethyl)benzyl]-2'-deoxycytidine 5'-(dihydrogen phosphate) 0
                          clitidine 5'-phosphate 0
                          dUMP + 2
                          p-nitrophenyl thymidine 5'-monophosphate 0
                          pyrimidine 2'-deoxyriboside 5'-phosphate 0
                          thymidine 5'-monophosphate + 2
Path 2
Term Annotations click to browse term
  CHEBI ontology 19773
    subatomic particle 19771
      composite particle 19771
        hadron 19771
          baryon 19771
            nucleon 19771
              atomic nucleus 19771
                atom 19771
                  main group element atom 19665
                    p-block element atom 19665
                      chalcogen 19394
                        oxygen atom 19357
                          oxygen molecular entity 19357
                            hydroxides 19080
                              oxoacid 18279
                                pnictogen oxoacid 10309
                                  phosphorus oxoacid 9231
                                    phosphoric acids 7952
                                      phosphoric acid 7952
                                        phosphoric acid derivative 7632
                                          phosphate 7632
                                            organic phosphate 7631
                                              carbohydrate phosphate 1714
                                                phospho sugar 1639
                                                  aldose phosphate 1637
                                                    aldopentose phosphate 1631
                                                      deoxyaldopentose phosphate 9
                                                        2-deoxyribose phosphate 9
                                                          2'-deoxyribonucleotide 8
                                                            2'-deoxyribonucleoside 5'-phosphate 8
                                                              2'-deoxyribonucleoside 5'-monophosphate 3
                                                                pyrimidine 2'-deoxyribonucleoside 5'-monophosphate 3
                                                                  (beta-D-glucopyranosyloxymethyl)deoxyuridine 5'-monophosphate + 0
                                                                  1-(2-deoxy-5-O-phosphono-beta-L-ribofuranosyl)thymine 0
                                                                  1-[(3xi,5S)-5-C-amino-2-deoxy-5-O-phosphono-D-glycero-pentofuranosyl]-5-methylpyrimidine-2,4(1H,3H)-dione 0
                                                                  2',3'-dideoxycytidine 5'-monophosphate 0
                                                                  2'-amino-2'-deoxyuridine 5'-(dihydrogen phosphate) 0
                                                                  2'-deoxy-5'-O-[(R)-hydroxy(phosphonoamino)phosphoryl]uridine 0
                                                                  2'-deoxy-5,6-dihydroxy-5,6-dihydrocytidine 5'-monophosphate 0
                                                                  2'-deoxy-5-(4,5-dihydroxypentyl)uridine 5'-monophosphate 0
                                                                  2'-deoxy-5-methyl-5'-cytidylic acid + 0
                                                                  2'-deoxy-5-methylisocytidylic acid 0
                                                                  2'-deoxycytosine 5'-monophosphate + 1
                                                                  2'-deoxyzebularine 5'-phosphate 0
                                                                  2-deoxy-5-O-phosphono-beta-L-ribofuranosylcytosine 0
                                                                  5'-O-[(S)-\{[6-(\{[6-(\{6-[(6-carbamoyl-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-2-yl)carbonyl]-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-2-yl\}carbonyl)-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-2-yl]carbonyl\}amino)hexyl]oxy\}(hydroxy)phosphoryl]thymidine 0
                                                                  5,6-dihydrothymidine 5'-monophosphate 0
                                                                  5,6-dihydroxy-2'-deoxyuridine 5'-monophosphate 0
                                                                  5-carboxy-2'-deoxyuridine 5'-monophosphate 0
                                                                  5-fluorodeoxyuridine monophosphate 0
                                                                  5-hydroxymethyldeoxycytidylic acid + 0
                                                                  N(4)-[4-(aminomethyl)benzyl]-2'-deoxycytidine 5'-(dihydrogen phosphate) 0
                                                                  clitidine 5'-phosphate 0
                                                                  dUMP + 2
                                                                  p-nitrophenyl thymidine 5'-monophosphate 0
                                                                  pyrimidine 2'-deoxyriboside 5'-phosphate 0
                                                                  thymidine 5'-monophosphate + 2
paths to the root