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ONTOLOGY REPORT - ANNOTATIONS


Term:9'-cis-neoxanthin
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Accession:CHEBI:35306 term browser browse the term
Definition:A neoxanthin in which all of the double bonds have trans geometry except for that at the 9' position, which is cis.
Synonyms:exact_synonym: (3S,3'S,5R,5'R,6R,6'S,8R,9'cis)-6,7-didehydro-5,5',6,6'-tetrahydro-5',6'-epoxy-beta,beta-carotene-3,3',5-triol
 related_synonym: (3S,5R,6R,3'S,5'R,6'S)-9'-cis-6,7-didehydro-5,6,5',6'-tetrahydro-5',6'-epoxy-beta,beta-carotene-3,5,3'-triol;   Formula=C40H56O4;   InChI=1S/C40H56O4/c1-29(17-13-19-31(3)21-22-35-36(5,6)25-33(41)27-38(35,9)43)15-11-12-16-30(2)18-14-20-32(4)23-24-40-37(7,8)26-34(42)28-39(40,10)44-40/h11-21,23-24,33-34,41-43H,25-28H2,1-10H3/b12-11+,17-13+,18-14+,24-23+,29-15+,30-16+,31-19+,32-20-/t22-,33-,34-,38+,39+,40-/m0/s1;   InChIKey=PGYAYSRVSAJXTE-OQASCVKESA-N;   SMILES=[H]C(=C=C1C(C)(C)C[C@H](O)C[C@@]1(C)O)C(\\C)=C\\C=C\\C(C)=C\\C=C\\C=C(C)\\C=C\\C=C(C)/C=C/[C@@]12O[C@]1(C)C[C@@H](O)CC2(C)C
 alt_id: CHEBI:20813;   CHEBI:31146
 xref: Beilstein:101196;   CAS:14660-91-4;   KEGG:C13431
 xref_mesh: MESH:C011947
 xref: MetaCyc:CPD-7424;   PDBeChem:NEX;   PMID:16277423;   PMID:17186379;   PMID:17350636;   PMID:19344105;   Reaxys:101196


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9'-cis-neoxanthin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aifm1 apoptosis inducing factor, mitochondria associated 1 JBrowse link X 135,304,063 135,343,062 RGD:6480464
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:6480464
G Casp8 caspase 8 JBrowse link 9 65,614,142 65,662,624 RGD:6480464
G Casp9 caspase 9 JBrowse link 5 160,356,211 160,373,774 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19779
    chemical entity 19778
      atom 19777
        nonmetal atom 19651
          carbon atom 19548
            organic molecular entity 19548
              olefinic compound 14480
                allenes 28
                  neoxanthin 4
                    9'-cis-neoxanthin 4
Path 2
Term Annotations click to browse term
  CHEBI ontology 19779
    subatomic particle 19777
      composite particle 19777
        hadron 19777
          baryon 19777
            nucleon 19777
              atomic nucleus 19777
                atom 19777
                  main group element atom 19664
                    main group molecular entity 19664
                      s-block molecular entity 19406
                        hydrogen molecular entity 19397
                          hydrides 18386
                            organic hydride 17747
                              organic fundamental parent 17747
                                hydrocarbon 17257
                                  terpene 9512
                                    tetraterpene 411
                                      carotene 411
                                        carotenoid 411
                                          xanthophyll 154
                                            epoxycarotenoid 28
                                              epoxycarotenol 28
                                                neoxanthin 4
                                                  9'-cis-neoxanthin 4
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