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ONTOLOGY REPORT - ANNOTATIONS


Term:isoprene
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Accession:CHEBI:35194 term browser browse the term
Definition:A hemiterpene with the formula CH2=C(CH3)CH=CH2; the monomer of natural rubber and a common structure motif to the isoprenoids, a large class of other naturally occurring compounds.
Synonyms:related_synonym: 2-methyl-1,3-butadiene;   2-methylbuta-1,3-diene;   2-methylbutadiene;   2-methyldivinyl;   CH2=C(CH3)CH=CH2;   Formula=C5H8;   InChI=1S/C5H8/c1-4-5(2)3/h4H,1-2H2,3H3;   InChIKey=RRHGJUQNOFWUDK-UHFFFAOYSA-N;   Isopren;   SMILES=CC(=C)C=C;   beta-methylbivinyl;   isopentadiene;   isopreno;   isoterpene
 xref: Beilstein:969158 "Beilstein";   CAS:78-79-5 "ChemIDplus";   CAS:78-79-5 "KEGG COMPOUND";   CAS:78-79-5 "NIST Chemistry WebBook";   Gmelin:1768 "Gmelin";   KEGG:C16521
 xref_mesh: MESH:C005059
 xref: MetaCyc:CPD-9436;   PMID:17921528 "Europe PMC";   PMID:19011917 "Europe PMC";   PMID:8690002 "Europe PMC";   Reaxys:969158 "Reaxys";   Wikipedia:Isoprene


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isoprene term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnd1 cyclin D1 JBrowse link 1 218,090,750 218,100,447 RGD:6480464
G Ccne1 cyclin E1 JBrowse link 1 94,485,830 94,495,112 RGD:6480464
G Cdh1 cadherin 1 JBrowse link 19 38,768,467 38,838,395 RGD:6480464
G Cdh2 cadherin 2 JBrowse link 18 8,146,971 8,366,037 RGD:6480464
G Cdkn1a cyclin-dependent kinase inhibitor 1A JBrowse link 20 6,348,422 6,358,864 RGD:6480464
G Cdkn1b cyclin-dependent kinase inhibitor 1B JBrowse link 4 168,689,043 168,694,159 RGD:6480464
G Hras HRas proto-oncogene, GTPase JBrowse link 1 214,178,404 214,181,841 RGD:6480464
G Kras KRAS proto-oncogene, GTPase JBrowse link 4 179,482,562 179,515,483 RGD:6480464
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:6480464
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:6480464
G Ocln occludin JBrowse link 2 30,527,327 30,577,218 RGD:6480464
G Snai2 snail family transcriptional repressor 2 JBrowse link 11 90,404,421 90,406,730 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19669
    chemical entity 19667
      molecular entity 19664
        polyatomic entity 19581
          molecule 19379
            organic molecule 19343
              volatile organic compound 13370
                isoprene 12
                  4-[(E)-\{amino[(3-methylbut-2-en-1-yl)amino]methylidene\}amino]butanoic acid 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19669
    subatomic particle 19665
      composite particle 19665
        hadron 19665
          baryon 19665
            nucleon 19665
              atomic nucleus 19665
                atom 19665
                  main group element atom 19545
                    main group molecular entity 19545
                      s-block molecular entity 19329
                        hydrogen molecular entity 19319
                          hydrides 18242
                            organic hydride 17528
                              organic fundamental parent 17528
                                hydrocarbon 16935
                                  olefin 7125
                                    acyclic olefin 7107
                                      alkadiene 2063
                                        isoprene 12
                                          4-[(E)-\{amino[(3-methylbut-2-en-1-yl)amino]methylidene\}amino]butanoic acid 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.