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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:beryllium(0)
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Accession:CHEBI:33783 term browser browse the term
Definition:An elemental beryllium that has formula Be.
Synonyms:related_synonym: Be(0);   Ben;   Formula=Be;   InChI=1S/Be;   InChIKey=ATBAMAFKBVZNFJ-UHFFFAOYSA-N;   SMILES=[Be];   beryllium;   beryllium metal;   beryllium metallic
 xref: CAS:7440-41-7
 xref_mesh: MESH:D001608


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beryllium(0) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN2A cyclin dependent kinase inhibitor 2A multiple interactions ISO [Beryllium results in increased methylation of CDKN2A promoter] which results in decreased expression of CDKN2A mRNA CTD PMID:11872642 NCBI chr 9:21,967,752...21,995,324
Ensembl chr 9:21,967,752...21,995,301 		JBrowse link
G ESR1 estrogen receptor 1 increases methylation ISO Beryllium results in increased methylation of ESR1 gene CTD PMID:11872642 NCBI chr 6:151,656,672...152,129,619
Ensembl chr 6:151,656,691...152,129,619 		JBrowse link
G HLA-DPB1 major histocompatibility complex, class II, DP beta 1 affects binding
increases response to substance		 EXP HLA-DPB1 protein mutant form binds to Beryllium
HLA-DPB1 gene polymorphism results in increased susceptibility to Beryllium; HLA-DPB1 gene SNP results in increased susceptibility to Beryllium; HLA-DPB1 protein mutant form results in increased susceptibility to Beryllium		 CTD PMID:11551429 PMID:15273960 PMID:17956852 NCBI chr 6:33,075,990...33,089,696
Ensembl chr 6:33,075,990...33,089,696 		JBrowse link
G HRAS HRas proto-oncogene, GTPase increases mutagenesis ISO Beryllium results in increased mutagenesis of HRAS gene CTD PMID:7545909 NCBI chr11:532,242...535,576
Ensembl chr11:532,242...537,321 		JBrowse link
G IL1B interleukin 1 beta increases expression
affects expression		 EXP Beryllium results in increased expression of IL1B mRNA
Beryllium affects the expression of IL1B mRNA		 CTD PMID:8473757 PMID:8629860 NCBI chr 2:112,829,751...112,836,779
Ensembl chr 2:112,829,751...112,836,816 		JBrowse link
G TNF tumor necrosis factor increases response to substance
increases secretion
increases expression		 EXP TNF promoter polymorphism results in increased susceptibility to Beryllium
Beryllium results in increased secretion of TNF protein
Beryllium results in increased expression of TNF mRNA		 CTD PMID:8629860 PMID:12449171 PMID:15127972 NCBI chr 6:31,575,565...31,578,336
Ensembl chr 6:31,575,565...31,578,336 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 26041
    role 25957
      biological role 25936
        epitope 7435
          beryllium atom 108
            beryllium molecular entity 108
              elemental beryllium 99
                beryllium(0) 6
                  beryllium-9 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 26041
    subatomic particle 26016
      composite particle 26016
        hadron 26016
          baryon 26016
            nucleon 26016
              atomic nucleus 26016
                atom 26016
                  main group element atom 25841
                    main group molecular entity 25841
                      s-block molecular entity 25162
                        alkaline earth molecular entity 922
                          beryllium molecular entity 108
                            elemental beryllium 99
                              beryllium(0) 6
                                beryllium-9 0
paths to the root