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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:beryllium coordination entity
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Accession:CHEBI:33782 term browser browse the term
Synonyms:related_synonym: beryllium coordination compounds;   beryllium coordination entities



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beryllium dihydride term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2a cyclin dependent kinase inhibitor 2A multiple interactions ISO [Beryllium results in increased methylation of CDKN2A promoter] which results in decreased expression of CDKN2A mRNA CTD PMID:11872642 NCBI chr 4:89,192,710...89,212,856
Ensembl chr 4:89,192,708...89,212,890
JBrowse link
G Esr1 estrogen receptor 1 (alpha) increases methylation ISO Beryllium results in increased methylation of ESR1 gene CTD PMID:11872642 NCBI chr10:4,561,989...4,955,633
Ensembl chr10:4,561,593...4,955,614
JBrowse link
G Hras Harvey rat sarcoma virus oncogene increases mutagenesis ISO Beryllium results in increased mutagenesis of HRAS gene CTD PMID:7545909 NCBI chr 7:140,770,839...140,773,938
Ensembl chr 7:140,769,018...140,773,918
JBrowse link
G Il1b interleukin 1 beta increases expression
affects expression
ISO Beryllium results in increased expression of IL1B mRNA
Beryllium affects the expression of IL1B mRNA
CTD PMID:8473757 PMID:8629860 NCBI chr 2:129,206,490...129,213,059
Ensembl chr 2:129,206,490...129,213,059
JBrowse link
G Tnf tumor necrosis factor increases expression
increases secretion
increases response to substance
ISO Beryllium results in increased expression of TNF mRNA
Beryllium results in increased secretion of TNF protein
TNF promoter polymorphism results in increased susceptibility to Beryllium
CTD PMID:8629860 PMID:12449171 PMID:15127972 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
trifluoroberyllate(1-) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxp pyridoxal (pyridoxine, vitamin B6) phosphatase decreases activity EXP beryllium trifluoride results in decreased activity of PDXP protein CTD PMID:24338473 NCBI chr15:78,796,342...78,803,717
Ensembl chr15:78,798,119...78,803,717
JBrowse link
G Pgp phosphoglycolate phosphatase decreases activity EXP beryllium trifluoride results in decreased activity of PGP protein CTD PMID:24338473 NCBI chr17:24,689,400...24,692,084
Ensembl chr17:24,689,366...24,692,084
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 22188
    role 22173
      biological role 22172
        epitope 7182
          beryllium atom 87
            beryllium molecular entity 87
              beryllium coordination entity 7
                beryllium hydride + 5
                tetraaquaberyllium(2+) 0
                tetrafluoroberyllate(2-) 0
                tetrahydroxoberyllate(2-) 0
                trifluoroberyllate(1-) 2
Path 2
Term Annotations click to browse term
  CHEBI ontology 22188
    subatomic particle 22180
      composite particle 22180
        hadron 22180
          baryon 22180
            nucleon 22180
              atomic nucleus 22180
                atom 22180
                  group 22082
                    polyatomic entity 22082
                      heteroatomic molecular entity 22008
                        coordination entity 15246
                          main-group coordination entity 2453
                            alkaline earth coordination entity 25
                              beryllium coordination entity 7
                                beryllium hydride + 5
                                tetraaquaberyllium(2+) 0
                                tetrafluoroberyllate(2-) 0
                                tetrahydroxoberyllate(2-) 0
                                trifluoroberyllate(1-) 2
paths to the root