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ONTOLOGY REPORT - ANNOTATIONS


Term:all-trans-neoxanthin
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Accession:CHEBI:32446 term browser browse the term
Definition:A neoxanthin in which all of the double bonds have trans geometry.
Synonyms:exact_synonym: (3S,3'S,5R,5'R,6R,6'S,8R)-6,7-didehydro-5,5',6,6'-tetrahydro-5',6'-epoxy-beta,beta-carotene-3,3',5-triol;   (3S,5R,6R,3'S,5'R,6'S)-6,7-didehydro-5',6'-epoxy-5,6,5',6'-tetrahydro-beta,beta-carotene-3,5,3'-triol
 related_synonym: Formula=C40H56O4;   InChI=1S/C40H56O4/c1-29(17-13-19-31(3)21-22-35-36(5,6)25-33(41)27-38(35,9)43)15-11-12-16-30(2)18-14-20-32(4)23-24-40-37(7,8)26-34(42)28-39(40,10)44-40/h11-21,23-24,33-34,41-43H,25-28H2,1-10H3/b12-11+,17-13+,18-14+,24-23+,29-15+,30-16+,31-19+,32-20+/t22-,33-,34-,38+,39+,40-/m0/s1;   InChIKey=PGYAYSRVSAJXTE-MTYISEJWSA-N;   Neoxanthin;   SMILES=[H]C(=C=C1C(C)(C)C[C@H](O)C[C@@]1(C)O)C(\\C)=C\\C=C\\C(C)=C\\C=C\\C=C(C)\\C=C\\C=C(C)\\C=C\\[C@@]12O[C@]1(C)C[C@@H](O)CC2(C)C
 alt_id: CHEBI:22344;   CHEBI:44249;   CHEBI:7517
 xref: Beilstein:101197 "Beilstein";   CAS:14660-91-4 "ChemIDplus";   CAS:14660-91-4 "KEGG COMPOUND";   COMe:MOL000106;   HMDB:HMDB0003020;   KEGG:C08606;   KEGG:C13431;   KNApSAcK:C00003780
 xref_mesh: MESH:C011947
 xref: MetaCyc:CPD1F-135;   PMID:11029576 "Europe PMC";   PMID:13706623 "Europe PMC";   PMID:15333710 "Europe PMC";   PMID:22502907 "Europe PMC";   PMID:8610051 "Europe PMC";   Reaxys:101197 "Reaxys"


show annotations for term's descendants       view all columns           Sort by:
 
all-trans-neoxanthin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aifm1 apoptosis inducing factor, mitochondria associated 1 JBrowse link X 135,304,063 135,343,062 RGD:6480464
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:6480464
G Casp8 caspase 8 JBrowse link 9 65,614,142 65,662,624 RGD:6480464
G Casp9 caspase 9 JBrowse link 5 160,356,211 160,373,774 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19669
    role 19613
      biological role 19611
        biophysical role 12104
          biological pigment 1035
            all-trans-neoxanthin 4
Path 2
Term Annotations click to browse term
  CHEBI ontology 19669
    subatomic particle 19665
      composite particle 19665
        hadron 19665
          baryon 19665
            nucleon 19665
              atomic nucleus 19665
                atom 19665
                  main group element atom 19545
                    main group molecular entity 19545
                      s-block molecular entity 19329
                        hydrogen molecular entity 19319
                          hydrides 18242
                            organic hydride 17528
                              organic fundamental parent 17528
                                hydrocarbon 16935
                                  terpene 9228
                                    tetraterpene 400
                                      carotene 400
                                        carotenoid 400
                                          xanthophyll 144
                                            epoxycarotenoid 24
                                              epoxycarotenol 24
                                                neoxanthin 4
                                                  all-trans-neoxanthin 4
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.