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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:valerate
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Accession:CHEBI:31011 term browser browse the term
Definition:A short-chain fatty acid anion that is the conjugate base of valeric acid; present in ester form as component of many steroid-based pharmaceuticals.
Synonyms:related_synonym: CH3-[CH2]3-COO(-);   Formula=C5H9O2;   InChI=1S/C5H10O2/c1-2-3-4-5(6)7/h2-4H2,1H3,(H,6,7)/p-1;   InChIKey=NQPDZGIKBAWPEJ-UHFFFAOYSA-M;   SMILES=CCCCC([O-])=O;   n-propylacetate;   pentanoate;   pentanoic acid, ion(1-)
 alt_id: CHEBI:14751;   CHEBI:25890
 xref: Beilstein:3903735;   CAS:10023-74-2;   Gmelin:325619;   PMID:17314444;   PMID:18783570;   Reaxys:3903735
 cyclic_relationship: is_conjugate_base_of CHEBI:17418



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sodium valproate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac8 histone deacetylase 8 decreases activity EXP Sodium valproate attenuates the reaction [deoxycorticosterone acetate increases activity of Hdac8 protein in the heart] RGD PMID:23868068 RGD:9681716 NCBI chr  X:67,385,288...67,593,014
Ensembl chr  X:67,385,289...67,592,923
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Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 20072
    role 20026
      biological role 20025
        biochemical role 19665
          metabolite 19648
            eukaryotic metabolite 19362
              plant metabolite 17824
                valerate 1
                  (2R,3R)-2,3-dihydroxy-3-methylpentanoate 0
                  (2R,3S)-2-hydroxy-3-methylpentanoate 0
                  (2S)-2-[(R)-1-carboxyethylamino]pentanoate 0
                  (R)-2-hydroxy-4-methylpentanoate 0
                  (S)-3-methyl-2-oxovalerate 0
                  (S)-4-amino-5-oxopentanoate 0
                  2,4-diaminopentanoate + 0
                  2-amino-4-oxopentanoic acid zwitterion + 0
                  2-oxopentanoate 0
                  3-hydroxy-3-methyl-2-oxopentanoate + 0
                  3-methyl-2-oxovalerate + 0
                  4-methyl-2-oxopentanoate 0
                  5-amino-2-oxopentanoate 0
                  5-guanidino-2-oxopentanoate 0
                  5-hydroxypentanoate + 0
                  5-oxopentanoate + 0
                  O-pentanoyl-L-serine residue 0
                  acetylpyruvate 0
                  mevalonate + 0
                  ornithinate + 0
                  oxopentanoates + 0
                  valproate + 1
Path 2
Term Annotations click to browse term
  CHEBI ontology 20072
    subatomic particle 20071
      composite particle 20071
        hadron 20071
          baryon 20071
            nucleon 20071
              atomic nucleus 20071
                atom 20071
                  main group element atom 19974
                    p-block element atom 19974
                      carbon group element atom 19903
                        carbon atom 19896
                          organic molecular entity 19896
                            organic ion 9258
                              organic anion 3108
                                carboxylic acid anion 2447
                                  monocarboxylic acid anion 1563
                                    fatty acid anion 109
                                      saturated fatty acid anion 108
                                        straight-chain saturated fatty acid anion 8
                                          valerate 1
                                            (2R,3R)-2,3-dihydroxy-3-methylpentanoate 0
                                            (2R,3S)-2-hydroxy-3-methylpentanoate 0
                                            (2S)-2-[(R)-1-carboxyethylamino]pentanoate 0
                                            (R)-2-hydroxy-4-methylpentanoate 0
                                            (S)-3-methyl-2-oxovalerate 0
                                            (S)-4-amino-5-oxopentanoate 0
                                            2,4-diaminopentanoate + 0
                                            2-amino-4-oxopentanoic acid zwitterion + 0
                                            2-oxopentanoate 0
                                            3-hydroxy-3-methyl-2-oxopentanoate + 0
                                            3-methyl-2-oxovalerate + 0
                                            4-methyl-2-oxopentanoate 0
                                            5-amino-2-oxopentanoate 0
                                            5-guanidino-2-oxopentanoate 0
                                            5-hydroxypentanoate + 0
                                            5-oxopentanoate + 0
                                            O-pentanoyl-L-serine residue 0
                                            acetylpyruvate 0
                                            mevalonate + 0
                                            ornithinate + 0
                                            oxopentanoates + 0
                                            valproate + 1
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