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ONTOLOGY REPORT - ANNOTATIONS


Term:stigmasterol
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Accession:CHEBI:28824 term browser browse the term
Definition:A 3beta-sterol that consists of 3beta-hydroxystigmastane having double bonds at the 5,6- and 22,23-positions.
Synonyms:exact_synonym: (22E)-stigmasta-5,22-dien-3beta-ol
 related_synonym: (3beta,22E)-stigmasta-5,22-dien-3-ol;   5,22-Cholestadien-24-ethyl-3beta-ol;   Formula=C29H48O;   InChI=1S/C29H48O/c1-7-21(19(2)3)9-8-20(4)25-12-13-26-24-11-10-22-18-23(30)14-16-28(22,5)27(24)15-17-29(25,26)6/h8-10,19-21,23-27,30H,7,11-18H2,1-6H3/b9-8+/t20-,21-,23+,24+,25-,26+,27+,28+,29-/m1/s1;   InChIKey=HCXVJBMSMIARIN-PHZDYDNGSA-N;   SMILES=[H][C@@]1(CC[C@@]2([H])[C@]3([H])CC=C4C[C@@H](O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)\\C=C\\[C@@H](CC)C(C)C;   beta-stigmasterol;   phytosterol;   poriferasterol;   stigmasta-5,22-dien-3beta-ol
 alt_id: CHEBI:26774;   CHEBI:8195
 xref: Beilstein:2568182 "Beilstein";   CAS:83-48-7 "ChemIDplus";   CAS:83-48-7 "KEGG COMPOUND";   CAS:83-48-7 "NIST Chemistry WebBook";   HMDB:HMDB0000937;   KEGG:C05442;   KNApSAcK:C00003674;   KNApSAcK:C00023774;   LIPID_MAPS_instance:LMST01040123 "LIPID MAPS"
 xref_mesh: MESH:D013265
 xref: PMID:13318319 "Europe PMC";   PMID:13547565 "Europe PMC";   Reaxys:2568182 "Reaxys";   Wikipedia:Stigmasterol


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stigmasterol term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb11 ATP binding cassette subfamily B member 11 JBrowse link 3 55,480,024 55,587,946 RGD:6480464
G Abcg5 ATP binding cassette subfamily G member 5 JBrowse link 6 7,935,771 7,961,207 RGD:6480464
G Abcg8 ATP binding cassette subfamily G member 8 JBrowse link 6 7,961,413 7,980,708 RGD:6480464
G Acat1 acetyl-CoA acetyltransferase 1 JBrowse link 8 58,166,990 58,195,884 RGD:6480464
G Ankrd1 ankyrin repeat domain 1 JBrowse link 1 254,726,985 254,745,673 RGD:6480464
G Apoa1 apolipoprotein A1 JBrowse link 8 50,525,091 50,526,875 RGD:6480464
G Brinp3 BMP/retinoic acid inducible neural specific 3 JBrowse link 13 63,526,486 63,959,390 RGD:6480464
G Cldn11 claudin 11 JBrowse link 2 115,823,541 115,836,846 RGD:6480464
G Dnmt3l DNA methyltransferase 3 like JBrowse link 20 11,344,513 11,359,090 RGD:6480464
G Esr1 estrogen receptor 1 JBrowse link 1 41,192,029 41,594,799 RGD:6480464
G Fshr follicle stimulating hormone receptor JBrowse link 6 12,796,383 12,997,817 RGD:6480464
G Gabarap GABA type A receptor-associated protein JBrowse link 10 56,601,288 56,604,223 RGD:6480464
G Gfra1 GDNF family receptor alpha 1 JBrowse link 1 279,203,046 279,572,789 RGD:6480464
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase JBrowse link 2 27,480,224 27,500,654 RGD:6480464
G Hoxa5 homeo box A5 RGD:6480464
G Ifi35 interferon-induced protein 35 JBrowse link 10 89,358,376 89,366,628 RGD:6480464
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:6480464
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:6480464
G Kng2 kininogen 2 JBrowse link 11 81,509,185 81,516,759 RGD:6480464
G Mybpc2 myosin binding protein C, fast-type JBrowse link 1 100,506,704 100,530,201 RGD:6480464
G Nanog Nanog homeobox JBrowse link 4 155,531,906 155,539,268 RGD:6480464
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:6480464
G Npc1l1 NPC1 like intracellular cholesterol transporter 1 JBrowse link 14 86,345,946 86,560,694 RGD:6480464
G Nr0b1 nuclear receptor subfamily 0, group B, member 1 JBrowse link X 54,734,385 54,738,513 RGD:6480464
G Nr0b2 nuclear receptor subfamily 0, group B, member 2 JBrowse link 5 151,776,004 151,779,319 RGD:6480464
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 JBrowse link 7 30,003,429 30,162,095 RGD:6480464
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:6480464
G Rpl18a ribosomal protein L18A JBrowse link 16 20,293,277 20,295,283 RGD:6480464
G Rpl31 ribosomal protein L31 JBrowse link 9 46,086,959 46,090,444 RGD:6480464
G Rpl36 ribosomal protein L36 JBrowse link 9 10,441,228 10,441,981 RGD:6480464
G Rpph1 ribonuclease P RNA component H1 JBrowse link 15 27,738,989 27,739,245 RGD:6480464
G Rps14 ribosomal protein S14 JBrowse link 18 56,042,532 56,047,316 RGD:6480464
G Rps27 ribosomal protein S27 JBrowse link 2 189,572,175 189,573,280 RGD:6480464
G Rps7 ribosomal protein S7 JBrowse link 6 47,899,525 47,904,389 RGD:6480464
G Stra8 stimulated by retinoic acid 8 JBrowse link 4 62,447,724 62,474,802 RGD:6480464
G Tm2d3 TM2 domain containing 3 JBrowse link 1 126,573,474 126,595,778 RGD:6480464
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:6480464
G Zbtb16 zinc finger and BTB domain containing 16 JBrowse link 8 52,980,226 53,146,765 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19662
    role 19606
      biological role 19604
        biochemical role 19133
          vitamin 7463
            stigmasterol 38
              stigmasterol 3-O-acetate 0
              stigmasterol 3-O-beta-D-glucoside 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19662
    subatomic particle 19658
      composite particle 19658
        hadron 19658
          baryon 19658
            nucleon 19658
              atomic nucleus 19658
                atom 19658
                  main group element atom 19539
                    p-block element atom 19539
                      carbon group element atom 19422
                        carbon atom 19414
                          organic molecular entity 19414
                            organic molecule 19337
                              organic cyclic compound 19089
                                organic polycyclic compound 16028
                                  steroid 12769
                                    steroid fundamental parent 12392
                                      stigmastane 39
                                        stigmastane derivative 38
                                          stigmastane sterol 38
                                            stigmasterol 38
                                              stigmasterol 3-O-acetate 0
                                              stigmasterol 3-O-beta-D-glucoside 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.