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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:verbascose
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Accession:CHEBI:28586 term browser browse the term
Definition:A pentasaccharide that is stachiose which has an additional unit of α-D-galactopyranose attached by a 1→6 glycosidic linkage to the terminal galactosyl residue.
Synonyms:related_synonym: D-verbascose;   beta-D-Fructofuranosyl O-alpha-D-galactopyranosyl-(1-6)-O-alpha-D-galactopyranosyl-(1-6)-O-alpha-D-galactopyranosyl-(1-6)-alpha-D-glucopyranoside;   beta-D-Galp-(1->6)-beta-D-Galp-(1->6)-beta-D-Galp-(1->6)-alpha-D-Glcp-(1<->2)-beta-D-Fruf;   beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside
 alt_id: CHEBI:10371;   CHEBI:22764
 xref: CAS:546-62-3;   KNApSAcK:C00001154
 xref_mesh: MESH:C570815
 xref: Reaxys:77323;   kegg.compound:C08252;   kegg.glycan:G00564;   metacyc.compound:CPD-8065;   pubmed:11675396;   pubmed:22608234
 chemrof_formula: C30H52O26
 chemrof_inchikey: FLUADVWHMHPUCG-SWPIJASHSA-N
 chemrof_inchi: InChI=1S/C30H52O26/c31-1-7-12(34)17(39)21(43)26(51-7)48-3-9-13(35)18(40)22(44)27(52-9)49-4-10-14(36)19(41)23(45)28(53-10)50-5-11-15(37)20(42)24(46)29(54-11)56-30(6-33)25(47)16(38)8(2-32)55-30/h7-29,31-47H,1-6H2/t7-,8-,9-,10-,11-,12+,13+,14+,15-,16-,17+,18+,19+,20+,21-,22-,23-,24-,25+,26+,27+,28+,29-,30+/m1/s1
 chemrof_smiles: OC[C@H]1O[C@H](OC[C@H]2O[C@H](OC[C@H]3O[C@H](OC[C@H]4O[C@H](O[C@]5(CO)O[C@H](CO)[C@@H](O)[C@@H]5O)[C@H](O)[C@@H](O)[C@@H]4O)[C@H](O)[C@@H](O)[C@H]3O)[C@H](O)[C@@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@H]1O
 chemrof_wurcs: WURCS=2.0/3,5,4/[a2122h-1a_1-5][ha122h-2b_2-5][a2112h-1a_1-5]/1-2-3-3-3/a1-b2_a6-c1_c6-d1_d6-e1
 cyclic_relationship: has_functional_parent CHEBI:17164


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verbascose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CXCL8 C-X-C motif chemokine ligand 8 multiple interactions EXP verbascose inhibits the reaction [[lipopolysaccharide, Escherichia coli O111 B4 co-treated with IFNG protein] results in increased secretion of CXCL8 protein] CTD PMID:33130239 NCBI chr 4:73,740,569...73,743,716
Ensembl chr 4:73,740,519...73,747,379 		JBrowse link
G IFNG interferon gamma multiple interactions EXP [Gallic Acid co-treated with Butyric Acid co-treated with verbascose] affects the reaction [[lipopolysaccharide, Escherichia coli O111 B4 co-treated with IFNG protein] results in increased secretion of IL1B protein]; verbascose affects the reaction [[lipopolysaccharide, Escherichia coli O111 B4 co-treated with IFNG protein] results in increased secretion of IL1B protein]; verbascose inhibits the reaction [[lipopolysaccharide, Escherichia coli O111 B4 co-treated with IFNG protein] results in increased secretion of CXCL8 protein]; verbascose promotes the reaction [[lipopolysaccharide, Escherichia coli O111 B4 co-treated with IFNG protein] results in increased secretion of TNF protein] CTD PMID:33130239 NCBI chr12:68,154,768...68,159,740
Ensembl chr12:68,154,768...68,159,740 		JBrowse link
G IL1B interleukin 1 beta multiple interactions EXP [Gallic Acid co-treated with Butyric Acid co-treated with verbascose] affects the reaction [[lipopolysaccharide, Escherichia coli O111 B4 co-treated with IFNG protein] results in increased secretion of IL1B protein]; verbascose affects the reaction [[lipopolysaccharide, Escherichia coli O111 B4 co-treated with IFNG protein] results in increased secretion of IL1B protein] CTD PMID:33130239 NCBI chr 2:112,829,751...112,836,779
Ensembl chr 2:112,829,751...112,836,816 		JBrowse link
G TNF tumor necrosis factor multiple interactions EXP verbascose promotes the reaction [[lipopolysaccharide, Escherichia coli O111 B4 co-treated with IFNG protein] results in increased secretion of TNF protein] CTD PMID:33130239 NCBI chr 6:31,575,565...31,578,336
Ensembl chr 6:31,575,565...31,578,336 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 26866
    chemical entity 26846
      atom 26842
        nonmetal atom 26129
          oxygen atom 25332
            oxygen molecular entity 25332
              organooxygen compound 24567
                carbohydrates and carbohydrate derivatives 16621
                  glycan 9121
                    oligosaccharide 195
                      raffinose family oligosaccharide 15
                        verbascose 4
Path 2
Term Annotations click to browse term
  CHEBI ontology 26866
    subatomic particle 26844
      composite particle 26844
        hadron 26842
          baryon 26844
            nucleon 26842
              atomic nucleus 26844
                atom 26842
                  main group element atom 26592
                    p-block element atom 26592
                      carbon group element atom 26073
                        carbon atom 26011
                          organic molecular entity 26011
                            heteroorganic entity 25339
                              organochalcogen compound 24942
                                organooxygen compound 24567
                                  carbohydrates and carbohydrate derivatives 16621
                                    carbohydrate 6694
                                      oligosaccharide 195
                                        pentasaccharide 4
                                          verbascose 4
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