Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:2-deoxy-D-ribofuranose 1-phosphate
go back to main search page
Accession:CHEBI:28542 term browser browse the term
Definition:A 2-deoxyribose 1-phosphate with D-ribofuranose as the sugar. An intermediate in the metabolism of pyrimidine.
Synonyms:exact_synonym: 2-deoxy-D-erythro-pentofuranose 1-(dihydrogen phosphate)
 related_synonym: 2-Deoxy-D-ribose 1-phosphate;   2-deoxy-1-O-phosphono-D-erythro-pentofuranose;   2-deoxy-1-O-phosphono-D-ribofuranose;   Formula=C5H11O7P;   InChI=1S/C5H11O7P/c6-2-4-3(7)1-5(11-4)12-13(8,9)10/h3-7H,1-2H2,(H2,8,9,10)/t3-,4+,5?/m0/s1;   InChIKey=KBDKAJNTYKVSEK-PYHARJCCSA-N;   SMILES=OC[C@H]1OC(C[C@@H]1O)OP(O)(O)=O
 alt_id: CHEBI:1081;   CHEBI:19558
 xref: Beilstein:1285902;   CAS:17210-42-3;   ECMDB:ECMDB01351;   HMDB:HMDB0001351;   KEGG:C00672
 xref_mesh: MESH:C031302
 xref: PMID:11103787;   Reaxys:1285902;   YMDB:YMDB00663
 cyclic_relationship: is_conjugate_acid_of CHEBI:58576



show annotations for term's descendants           Sort by:
 
2-deoxy-D-ribofuranose 1-phosphate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tymp thymidine phosphorylase increases abundance ISO TYMP protein results in increased abundance of 2-deoxyribose 1-phosphate CTD PMID:11103787 NCBI chr 7:120,438,768...120,444,088
Ensembl chr 7:120,438,125...120,447,429
Ensembl chr 7:120,438,125...120,447,429
JBrowse link
2-deoxy-alpha-D-ribose 1-phosphate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tymp thymidine phosphorylase increases abundance ISO TYMP protein results in increased abundance of 2-deoxyribose 1-phosphate CTD PMID:11103787 NCBI chr 7:120,438,768...120,444,088
Ensembl chr 7:120,438,125...120,447,429
Ensembl chr 7:120,438,125...120,447,429
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 20059
    role 20009
      biological role 20008
        biochemical role 19630
          metabolite 19611
            fundamental metabolite 12804
              2-deoxy-D-ribofuranose 1-phosphate 1
                2-deoxy-alpha-D-ribose 1-phosphate 1
                2-deoxy-beta-D-ribose 1-phosphate 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 20059
    subatomic particle 20056
      composite particle 20056
        hadron 20056
          baryon 20056
            nucleon 20056
              atomic nucleus 20056
                atom 20056
                  main group element atom 19956
                    p-block element atom 19956
                      chalcogen 19683
                        oxygen atom 19655
                          oxygen molecular entity 19655
                            hydroxides 19380
                              oxoacid 18684
                                pnictogen oxoacid 10746
                                  phosphorus oxoacid 9740
                                    phosphoric acids 8548
                                      phosphoric acid 8548
                                        phosphoric acid derivative 8250
                                          phosphate 8250
                                            organic phosphate 8249
                                              carbohydrate phosphate 1740
                                                phospho sugar 1665
                                                  aldose phosphate 1663
                                                    aldopentose phosphate 1655
                                                      deoxyaldopentose phosphate 9
                                                        2-deoxyribose phosphate 9
                                                          2-deoxyribose 1-phosphate 1
                                                            2-deoxy-D-ribofuranose 1-phosphate 1
                                                              2-deoxy-alpha-D-ribose 1-phosphate 1
                                                              2-deoxy-beta-D-ribose 1-phosphate 0
paths to the root