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ONTOLOGY REPORT - ANNOTATIONS


Term:kanamycin B
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Accession:CHEBI:28098 term browser browse the term
Definition:A kanamycin that has formula C18H37N5O10.
Synonyms:exact_synonym: (1R,2S,3S,4R,6S)-4,6-diamino-3-(3-amino-3-deoxy-alpha-D-glucopyranosyloxy)-2-hydroxycyclohexyl 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranoside
 related_synonym: 2'-amino-2'-deoxykanamycin;   Bekanamycin;   Formula=C18H37N5O10;   InChI=1S/C18H37N5O10/c19-2-6-11(26)12(27)9(23)17(30-6)32-15-4(20)1-5(21)16(14(15)29)33-18-13(28)8(22)10(25)7(3-24)31-18/h4-18,24-29H,1-3,19-23H2/t4-,5+,6+,7+,8-,9+,10+,11+,12+,13+,14-,15+,16-,17+,18+/m0/s1;   InChIKey=SKKLOUVUUNMCJE-FQSMHNGLSA-N;   Nebramycin V;   Nebramycin factor 5;   O-3-amino-3-deoxy-alpha-D-glucopyranosyl-(1->4)-O-(2,6-diamino-2,6-dideoxy-alpha-D-glucopyranosyl-(1->6))-2-deoxy-D-streptamine;   SMILES=NC[C@H]1O[C@H](O[C@@H]2[C@@H](N)C[C@@H](N)[C@H](O[C@H]3O[C@H](CO)[C@@H](O)[C@H](N)[C@H]3O)[C@H]2O)[C@H](N)[C@@H](O)[C@@H]1O
 alt_id: CHEBI:14489;   CHEBI:24948;   CHEBI:24949;   CHEBI:6107
 xref: Beilstein:61646;   CAS:4696-76-8;   Drug_Central:1520;   KEGG:C00825;   KEGG:D07497;   KNApSAcK:C00018692;   PDBeChem:9CS
 cyclic_relationship: is_conjugate_base_of CHEBI:58549


show annotations for term's descendants       view all columns           Sort by:
 
tobramycin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anpep alanyl aminopeptidase, membrane JBrowse link 1 141,561,364 141,604,249 RGD:6480464
G B2m beta-2 microglobulin JBrowse link 3 114,087,287 114,093,311 RGD:6480464
G Ctsb cathepsin B JBrowse link 15 46,316,741 46,337,613 RGD:6480464
G Elane elastase, neutrophil expressed JBrowse link 7 12,638,320 12,640,168 RGD:6480464
G Gadd45a growth arrest and DNA-damage-inducible, alpha JBrowse link 4 97,782,512 97,784,814 RGD:6480464
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:6480464
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming JBrowse link 1 214,725,482 214,756,653 RGD:6480464
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:6480464
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19770
    role 19717
      biological role 19716
        antimicrobial agent 17260
          carbohydrate-containing antibiotic 2552
            aminoglycoside antibiotic 2534
              kanamycins 24
                kanamycin B 9
                  3''-deamino-3''-hydroxykanamycin B 0
                  N(6')-acetylkanamycin B 0
                  arbekacin + 0
                  bekanamycin sulfate 0
                  dibekacin + 0
                  kanamycin 0
                  tobramycin + 9
Path 2
Term Annotations click to browse term
  CHEBI ontology 19770
    subatomic particle 19768
      composite particle 19768
        hadron 19768
          baryon 19768
            nucleon 19768
              atomic nucleus 19768
                atom 19768
                  main group element atom 19655
                    p-block element atom 19655
                      carbon group element atom 19548
                        carbon atom 19537
                          organic molecular entity 19537
                            heteroorganic entity 19129
                              organochalcogen compound 18828
                                organooxygen compound 18747
                                  carbohydrates and carbohydrate derivatives 12146
                                    carbohydrate 12146
                                      carbohydrate derivative 11770
                                        glycosyl compound 10806
                                          glycoside 9153
                                            aminoglycoside 8361
                                              aminoglycoside antibiotic 2534
                                                kanamycins 24
                                                  kanamycin B 9
                                                    3''-deamino-3''-hydroxykanamycin B 0
                                                    N(6')-acetylkanamycin B 0
                                                    arbekacin + 0
                                                    bekanamycin sulfate 0
                                                    dibekacin + 0
                                                    kanamycin 0
                                                    tobramycin + 9
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.