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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:glycogen
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Accession:CHEBI:28087 term browser browse the term
Definition:A polydisperse, highly branched glucan composed of chains of D-glucopyranose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages. A small number of alpha(1->3) glycosidic linkages and some cumulative alpha(1->6) links also may occur. The branches in glycogen typically contain 8 to 12 glucose residues.
Synonyms:related_synonym: WURCS=2.0/1,4,3/[a2122h-1a_1-5]/1-1-1-1/a4-b1_b4-c1_b6-d1;   animal starch;   liver starch
 alt_id: CHEBI:24379;   CHEBI:5466
 xref: CAS:9005-79-2;   GlyGen:G99991IU;   GlyTouCan:G99991IU;   HMDB:HMDB0000757;   KEGG:C00182
 xref_mesh: MESH:D006003
 xref: MetaCyc:CPD0-971;   Wikipedia:Glycogen



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glycogen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase affects metabolic processing ISO AGL protein affects the metabolism of Glycogen CTD PMID:24700805 NCBI chr 2:204,705,053...204,760,966
Ensembl chr 2:204,705,053...204,760,828
JBrowse link
G Dusp8 dual specificity phosphatase 8 multiple interactions ISO [DUSP8 protein affects the susceptibility to Dietary Fats] which affects the abundance of Glycogen CTD PMID:32780722 NCBI chr 1:197,167,392...197,184,285
Ensembl chr 1:197,169,422...197,182,921
JBrowse link
G Htr2b 5-hydroxytryptamine receptor 2B multiple interactions ISO [Fluoxetine results in increased expression of and results in increased activity of HTR2B protein] which results in increased metabolism of Glycogen CTD PMID:11930908 NCBI chr 9:86,735,793...86,756,640
Ensembl chr 9:86,742,102...86,755,108
JBrowse link
G Ins2 insulin 2 multiple interactions
increases abundance
increases chemical synthesis
ISO Estradiol promotes the reaction [INS protein results in increased chemical synthesis of Glycogen]; Glucose inhibits the reaction [INS protein results in increased chemical synthesis of Glycogen]; mono-(2-ethylhexyl)phthalate inhibits the reaction [INS protein results in increased abundance of Glycogen]; RBP4 protein promotes the reaction [mono-(2-ethylhexyl)phthalate inhibits the reaction [INS protein results in increased abundance of Glycogen]]; Testosterone promotes the reaction [INS protein results in increased chemical synthesis of Glycogen] CTD PMID:15864539 PMID:21632903 PMID:31228551 NCBI chr 1:197,843,277...197,992,522
Ensembl chr 1:197,843,281...197,864,775
JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 multiple interactions ISO NFE2L2 protein affects the reaction [Streptozocin results in decreased abundance of Glycogen] CTD PMID:20086057 NCBI chr 3:60,594,239...60,621,785
Ensembl chr 3:60,594,242...60,621,737
JBrowse link
G Nono non-POU domain containing, octamer-binding decreases abundance ISO NONO gene mutant form results in decreased abundance of Glycogen CTD PMID:29358041 NCBI chr  X:66,554,131...66,571,992
Ensembl chr  X:66,554,098...66,571,952
JBrowse link
G Nr1i3 nuclear receptor subfamily 1, group I, member 3 decreases abundance ISO NR1I3 mRNA results in decreased abundance of Glycogen CTD PMID:32428594 NCBI chr13:83,632,940...83,638,193
Ensembl chr13:83,632,899...83,637,906
JBrowse link
G Rbp4 retinol binding protein 4 multiple interactions ISO RBP4 protein promotes the reaction [mono-(2-ethylhexyl)phthalate inhibits the reaction [INS protein results in increased abundance of Glycogen]] CTD PMID:31228551 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase multiple interactions ISO SRC protein promotes the reaction [Tetrachlorodibenzodioxin results in decreased abundance of Glycogen] CTD PMID:11882352 NCBI chr 3:146,091,969...146,139,492
Ensembl chr 3:146,091,841...146,139,476
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 20089
    role 20042
      biological role 20011
        biochemical role 19671
          metabolite 19631
            eukaryotic metabolite 19358
              fungal metabolite 17645
                Saccharomyces cerevisiae metabolite 16816
                  glycogen 9
Path 2
Term Annotations click to browse term
  CHEBI ontology 20089
    subatomic particle 20058
      composite particle 20058
        hadron 20088
          baryon 20088
            nucleon 20088
              atomic nucleus 20088
                atom 20058
                  main group element atom 19960
                    p-block element atom 19990
                      carbon group element atom 19916
                        carbon atom 19909
                          organic molecular entity 19909
                            heteroorganic entity 19591
                              organochalcogen compound 19339
                                organooxygen compound 19273
                                  carbohydrates and carbohydrate derivatives 13952
                                    carbohydrate 13936
                                      polysaccharide 3095
                                        homopolysaccharide 1383
                                          glucan 1365
                                            glycogens 9
                                              glycogen 9
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