Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:cyanidin cation
go back to main search page
Accession:CHEBI:27843 term browser browse the term
Definition:An anthocyanidin cation that is flavylium substituted at positions 3, 3', 4', 5 and 7 by hydroxy groups.
Synonyms:exact_synonym: 2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxychromenium
 related_synonym: 2-(3,4-Dihydroxyphenyl)-3,5,7-trihydroxy-1-Benzopyrylium;   2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxychromenylium;   3,5,7,3',4'-Pentahydroxyflavylium;   Cyanidin;   Cyanidine;   Cyanidol;   Formula=C15H11O6;   InChI=1S/C15H10O6/c16-8-4-11(18)9-6-13(20)15(21-14(9)5-8)7-1-2-10(17)12(19)3-7/h1-6H,(H4-,16,17,18,19,20)/p+1;   InChIKey=VEVZSMAEJFVWIL-UHFFFAOYSA-O;   SMILES=Oc1cc(O)c2cc(O)c([o+]c2c1)-c1ccc(O)c(O)c1
 alt_id: CHEBI:23425;   CHEBI:3970
 xref: Beilstein:1690254 "Beilstein";   CAS:13306-05-3 "ChemIDplus";   KEGG:C05905;   KNApSAcK:C00006614;   LIPID_MAPS_instance:LMPK12010002 "LIPID MAPS"
 xref_mesh: MESH:C017154
 xref: MetaCyc:CPD-591;   PMID:23123597 "Europe PMC";   PMID:23360684 "Europe PMC";   PMID:23375153 "Europe PMC";   PMID:23389674 "Europe PMC";   Reaxys:1690254 "Reaxys";   Wikipedia:Cyanidin
 cyclic_relationship: is_conjugate_acid_of CHEBI:71682


show annotations for term's descendants       view all columns           Sort by:
 
cyanidin cation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahr aryl hydrocarbon receptor JBrowse link 6 54,963,990 55,001,806 RGD:6480464
G Hbegf heparin-binding EGF-like growth factor JBrowse link 18 29,330,302 29,340,185 RGD:6480464
G Hlcs holocarboxylase synthetase JBrowse link 11 34,357,372 34,537,798 RGD:6480464
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:6480464
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:6480464
G Nos3 nitric oxide synthase 3 JBrowse link 4 7,321,908 7,342,404 RGD:6480464
G Pdgfa platelet derived growth factor subunit A JBrowse link 12 17,734,141 17,756,186 RGD:6480464
G Pdgfb platelet derived growth factor subunit B JBrowse link 7 121,215,458 121,233,092 RGD:6480464
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:6480464
G Ucp2 uncoupling protein 2 JBrowse link 1 165,506,375 165,512,744 RGD:6480464
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:6480464
cyanidin 3-O-beta-D-glucoside term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agt angiotensinogen JBrowse link 19 57,321,594 57,333,460 RGD:6480464
G Ahr aryl hydrocarbon receptor JBrowse link 6 54,963,990 55,001,806 RGD:6480464
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:6480464
G Akt2 AKT serine/threonine kinase 2 JBrowse link 1 84,400,939 84,451,223 RGD:6480464
G Avp arginine vasopressin JBrowse link 3 123,117,482 123,119,460 RGD:6480464
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:6480464
G Casp8 caspase 8 JBrowse link 9 65,614,142 65,662,624 RGD:6480464
G Crem cAMP responsive element modulator JBrowse link 17 57,021,704 57,090,888 RGD:6480464
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 JBrowse link 8 62,798,317 62,809,848 RGD:6480464
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:6480464
G Fshb follicle stimulating hormone subunit beta JBrowse link 3 98,088,321 98,092,131 RGD:6480464
G Fshr follicle stimulating hormone receptor JBrowse link 6 12,796,383 12,997,817 RGD:6480464
G Fyn FYN proto-oncogene, Src family tyrosine kinase JBrowse link 20 44,436,354 44,630,316 RGD:6480464
G Gclc glutamate-cysteine ligase, catalytic subunit JBrowse link 8 85,059,051 85,097,471 RGD:6480464
G Gclm glutamate cysteine ligase, modifier subunit JBrowse link 2 225,827,504 225,847,876 RGD:6480464
G Gnrh1 gonadotropin releasing hormone 1 JBrowse link 15 44,441,856 44,446,064 RGD:6480464
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:6480464
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:6480464
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:6480464
G Il1a interleukin 1 alpha JBrowse link 3 121,824,712 121,836,122 RGD:6480464
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:6480464
G Kiss1 KiSS-1 metastasis-suppressor JBrowse link 13 50,529,506 50,537,603 RGD:6480464
G Lhb luteinizing hormone subunit beta JBrowse link 1 101,409,992 101,413,725 RGD:6480464
G Map2k4 mitogen activated protein kinase kinase 4 JBrowse link 10 52,196,121 52,301,887 RGD:6480464
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:6480464
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:6480464
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:6480464
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:6480464
G Nfkbia NFKB inhibitor alpha JBrowse link 6 76,267,227 76,270,457 RGD:6480464
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:6480464
G Nqo1 NAD(P)H quinone dehydrogenase 1 JBrowse link 19 38,422,210 38,437,103 RGD:6480464
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha JBrowse link 2 118,831,350 118,861,456 RGD:6480464
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 JBrowse link 2 31,742,326 31,826,882 RGD:6480464
G Pparg peroxisome proliferator-activated receptor gamma JBrowse link 4 147,274,055 147,399,383 RGD:6480464
G Prkaca protein kinase cAMP-activated catalytic subunit alpha JBrowse link 19 25,095,089 25,118,869 RGD:6480464
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:6480464
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:6480464
G Sele selectin E JBrowse link 13 82,355,234 82,365,323 RGD:6480464
G Star steroidogenic acute regulatory protein JBrowse link 16 71,036,204 71,040,847 RGD:6480464
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:6480464
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:6480464
G Vcam1 vascular cell adhesion molecule 1 JBrowse link 2 219,071,193 219,090,931 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19748
    role 19695
      chemical role 19211
        antioxidant 14137
          cyanidin cation 49
            6-hydroxycyanidin 0
            cyanidin 3,3',5-tri-O-glucoside 0
            cyanidin 3,7-di-O-beta-D-glucoside 0
            cyanidin 3,7-di-O-beta-D-glucoside betaine 0
            cyanidin 3-O-(2''-O-galloyl-beta-D-galactopyranoside) 0
            cyanidin 3-O-(2-O-beta-D-glucuronosyl)-beta-D-glucoside 0
            cyanidin 3-O-(2-O-beta-D-glucuronosyl)-beta-D-glucoside betaine 0
            cyanidin 3-O-(2-O-beta-D-glucuronosyl)-beta-D-glucoside(2-) 0
            cyanidin 3-O-(6-O-(E)-4-coumaroyl-beta-D-glucoside) 0
            cyanidin 3-O-(6-O-acetyl-beta-D-glucoside) 0
            cyanidin 3-O-(6-O-glucosyl-2-O-xylosylgalactoside) 0
            cyanidin 3-O-(6-O-malonyl-beta-D-glucoside) 0
            cyanidin 3-O-[6-O-(4-O-beta-D-glucosyl-p-coumaroyl)-2-O-(2-O-sinapoyl-beta-D-xylosyl)-beta-D-glucosyl]-5-O-(6-O-malonyl-beta-D-glucoside) 0
            cyanidin 3-O-[6-O-(4-O-beta-D-glucosyl-p-coumaroyl)-2-O-(beta-D-xylosyl)-beta-D-glucosyl]-5-O-(6-O-malonyl-beta-D-glucoside) 0
            cyanidin 3-O-[beta-D-xylosyl-(1->2)-beta-D-galactoside] 0
            cyanidin 3-O-[beta-D-xylosyl-(1->2)-beta-D-galactoside](1-) 0
            cyanidin 3-O-\ 0
            cyanidin 3-O-\ 0
            cyanidin 3-O-beta-D-galactoside + 0
            cyanidin 3-O-beta-D-galactoside betaine 0
            cyanidin 3-O-beta-D-glucoside 42
            cyanidin 3-O-beta-D-glucoside(1-) 0
            cyanidin 3-O-beta-D-sambubioside 0
            cyanidin 3-O-rutinoside + 0
            cyanidin 3-O-rutinoside 5-O-beta-D-glucoside 0
            cyanin + 0
            cyanin betaine 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19748
    subatomic particle 19744
      composite particle 19744
        hadron 19744
          baryon 19744
            nucleon 19744
              atomic nucleus 19744
                atom 19744
                  main group element atom 19628
                    p-block element atom 19628
                      carbon group element atom 19522
                        carbon atom 19516
                          organic molecular entity 19516
                            organic molecule 19434
                              organic cyclic compound 19201
                                organic heterocyclic compound 18270
                                  oxacycle 17014
                                    benzopyran 9469
                                      1-benzopyran 9164
                                        chromenes 902
                                          chromene 144
                                            2H-chromene 144
                                              chromenyliums 144
                                                chromenylium 144
                                                  flavylium 144
                                                    anthocyanidin cation 144
                                                      5-hydroxyanthocyanidin 93
                                                        cyanidin cation 49
                                                          6-hydroxycyanidin 0
                                                          cyanidin 3,3',5-tri-O-glucoside 0
                                                          cyanidin 3,7-di-O-beta-D-glucoside 0
                                                          cyanidin 3,7-di-O-beta-D-glucoside betaine 0
                                                          cyanidin 3-O-(2''-O-galloyl-beta-D-galactopyranoside) 0
                                                          cyanidin 3-O-(2-O-beta-D-glucuronosyl)-beta-D-glucoside 0
                                                          cyanidin 3-O-(2-O-beta-D-glucuronosyl)-beta-D-glucoside betaine 0
                                                          cyanidin 3-O-(2-O-beta-D-glucuronosyl)-beta-D-glucoside(2-) 0
                                                          cyanidin 3-O-(6-O-(E)-4-coumaroyl-beta-D-glucoside) 0
                                                          cyanidin 3-O-(6-O-acetyl-beta-D-glucoside) 0
                                                          cyanidin 3-O-(6-O-glucosyl-2-O-xylosylgalactoside) 0
                                                          cyanidin 3-O-(6-O-malonyl-beta-D-glucoside) 0
                                                          cyanidin 3-O-[6-O-(4-O-beta-D-glucosyl-p-coumaroyl)-2-O-(2-O-sinapoyl-beta-D-xylosyl)-beta-D-glucosyl]-5-O-(6-O-malonyl-beta-D-glucoside) 0
                                                          cyanidin 3-O-[6-O-(4-O-beta-D-glucosyl-p-coumaroyl)-2-O-(beta-D-xylosyl)-beta-D-glucosyl]-5-O-(6-O-malonyl-beta-D-glucoside) 0
                                                          cyanidin 3-O-[beta-D-xylosyl-(1->2)-beta-D-galactoside] 0
                                                          cyanidin 3-O-[beta-D-xylosyl-(1->2)-beta-D-galactoside](1-) 0
                                                          cyanidin 3-O-\ 0
                                                          cyanidin 3-O-\ 0
                                                          cyanidin 3-O-beta-D-galactoside + 0
                                                          cyanidin 3-O-beta-D-galactoside betaine 0
                                                          cyanidin 3-O-beta-D-glucoside 42
                                                          cyanidin 3-O-beta-D-glucoside(1-) 0
                                                          cyanidin 3-O-beta-D-sambubioside 0
                                                          cyanidin 3-O-rutinoside + 0
                                                          cyanidin 3-O-rutinoside 5-O-beta-D-glucoside 0
                                                          cyanin + 0
                                                          cyanin betaine 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.