Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:pelargonidin
go back to main search page
Accession:CHEBI:25863 term browser browse the term
Definition:An anthocyanidin cation that is flavylium substituted by a hydroxy groups at positions 3, 5, 7 and 4'.
Synonyms:exact_synonym: 3,5,7-trihydroxy-2-(4-hydroxyphenyl)chromenylium
 related_synonym: 3,5,7-trihydroxy-2-(4-hydroxyphenyl)-1-benzopyrylium;   Formula=C15H11O5;   InChI=1S/C15H10O5/c16-9-3-1-8(2-4-9)15-13(19)7-11-12(18)5-10(17)6-14(11)20-15/h1-7H,(H3-,16,17,18,19)/p+1;   InChIKey=XVFMGWDSJLBXDZ-UHFFFAOYSA-O;   SMILES=Oc1ccc(cc1)-c1[o+]c2cc(O)cc(O)c2cc1O
 xref: Beilstein:1688614 "Beilstein";   CAS:134-04-3 "KEGG COMPOUND";   CAS:7690-51-9 "ChemIDplus";   KEGG:C05904;   KNApSAcK:C00007232;   LIPID_MAPS_instance:LMPK12010003 "LIPID MAPS"
 xref_mesh: MESH:C066957
 xref: PMID:15588587 "Europe PMC";   PMID:23419638 "Europe PMC";   Reaxys:1688614 "Reaxys";   Wikipedia:Pelargonidin
 cyclic_relationship: is_conjugate_acid_of CHEBI:144777


show annotations for term's descendants       view all columns           Sort by:
 
pelargonidin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahr aryl hydrocarbon receptor JBrowse link 6 54,963,990 55,001,806 RGD:6480464
G Cdh1 cadherin 1 JBrowse link 19 38,768,467 38,838,395 RGD:6480464
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:6480464
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 JBrowse link 8 62,451,360 62,458,244 RGD:6480464
G Dnmt1 DNA methyltransferase 1 JBrowse link 8 21,922,515 21,968,495 RGD:6480464
G Dnmt3b DNA methyltransferase 3 beta JBrowse link 3 149,131,541 149,170,061 RGD:6480464
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:6480464
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:6480464
G Hdac3 histone deacetylase 3 JBrowse link 18 31,073,057 31,094,347 RGD:6480464
G Hdac4 histone deacetylase 4 JBrowse link 9 99,052,945 99,299,715 RGD:6480464
G Hdac7 histone deacetylase 7 JBrowse link 7 139,280,396 139,319,108 RGD:6480464
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:6480464
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:6480464
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:6480464
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:6480464
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:6480464
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:6480464
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:6480464
G Nqo1 NAD(P)H quinone dehydrogenase 1 JBrowse link 19 38,422,210 38,437,103 RGD:6480464
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:6480464
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:6480464
G Tlr4 toll-like receptor 4 JBrowse link 5 82,587,424 82,601,056 RGD:6480464
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:6480464
G Txnrd1 thioredoxin reductase 1 JBrowse link 7 26,946,124 26,984,400 RGD:6480464
G Vcam1 vascular cell adhesion molecule 1 JBrowse link 2 219,071,193 219,090,931 RGD:6480464
pelargonidin 3-O-beta-D-glucoside term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Car1 carbonic anhydrase 1 JBrowse link 2 88,185,204 88,227,486 RGD:6480464
G Car2 carbonic anhydrase 2 JBrowse link 2 88,097,740 88,112,868 RGD:6480464
pelargonidin 3-O-beta-D-glucoside chloride term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Car1 carbonic anhydrase 1 JBrowse link 2 88,185,204 88,227,486 RGD:6480464
G Car2 carbonic anhydrase 2 JBrowse link 2 88,097,740 88,112,868 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19669
    role 19613
      biological role 19611
        biochemical role 19138
          metabolite 19106
            eukaryotic metabolite 18748
              plant metabolite 17044
                pelargonidin 27
                  4'''-demalonylsalvianin 0
                  pelargonidin 3-O-(6-O-caffeoyl-beta-D-glucoside) 5-O-beta-D-glucoside 0
                  pelargonidin 3-O-(6-O-malonyl-beta-D-glucoside) 0
                  pelargonidin 3-O-beta-D-glucoside + 2
                  pelargonidin 3-O-beta-D-sambubioside 0
                  pelargonidin 3-O-sophoroside 0
                  pelargonidin chloride 0
                  pelargonin 0
                  salvianin 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19669
    subatomic particle 19665
      composite particle 19665
        hadron 19665
          baryon 19665
            nucleon 19665
              atomic nucleus 19665
                atom 19665
                  main group element atom 19545
                    p-block element atom 19545
                      carbon group element atom 19428
                        carbon atom 19420
                          organic molecular entity 19420
                            organic molecule 19343
                              organic cyclic compound 19093
                                organic heterocyclic compound 18157
                                  oxacycle 16945
                                    benzopyran 9428
                                      1-benzopyran 9120
                                        chromenes 894
                                          chromene 140
                                            2H-chromene 140
                                              chromenyliums 140
                                                chromenylium 140
                                                  flavylium 140
                                                    anthocyanidin cation 140
                                                      5-hydroxyanthocyanidin 93
                                                        pelargonidin 27
                                                          4'''-demalonylsalvianin 0
                                                          pelargonidin 3-O-(6-O-caffeoyl-beta-D-glucoside) 5-O-beta-D-glucoside 0
                                                          pelargonidin 3-O-(6-O-malonyl-beta-D-glucoside) 0
                                                          pelargonidin 3-O-beta-D-glucoside + 2
                                                          pelargonidin 3-O-beta-D-sambubioside 0
                                                          pelargonidin 3-O-sophoroside 0
                                                          pelargonidin chloride 0
                                                          pelargonin 0
                                                          salvianin 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.