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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:aminoglycoside antibiotic
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Accession:CHEBI:22507 term browser browse the term
Synonyms:related_synonym: aminoglycoside antibiotics


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gentamycin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCL2 C-C motif chemokine ligand 2 increases expression EXP Gentamicins results in increased expression of CCL2 protein CTD PMID:33290828 NCBI chr 9:39,008,187...39,009,932 JBrowse link
G CLU clusterin increases expression EXP Gentamicins results in increased expression of CLU mRNA; Gentamicins results in increased expression of CLU protein CTD PMID:25034533 PMID:33290828 NCBI chr25:29,982,811...29,999,565
Ensembl chr25:29,982,811...29,999,563 		JBrowse link
G LCN2 lipocalin 2 increases expression EXP Gentamicins results in increased expression of LCN2 mRNA; Gentamicins results in increased expression of LCN2 protein CTD PMID:25034533 PMID:33290828 NCBI chr 9:55,328,118...55,342,535
Ensembl chr 9:55,328,133...55,332,038 		JBrowse link
G LOC607874 cystatin-C-like increases expression EXP Gentamicins results in increased expression of CST3 protein CTD PMID:33290828 NCBI chr23:49,562...53,618 JBrowse link
G MIR15B microRNA mir-15b affects expression EXP Gentamicins affects the expression of MIR15B mRNA CTD PMID:33290828 NCBI chr34:26,460,663...26,460,722
Ensembl chr34:26,460,645...26,460,741 		JBrowse link
G MIR30A microRNA mir-30a increases expression EXP Gentamicins results in increased expression of MIR30A mRNA CTD PMID:33290828 NCBI chr12:33,783,894...33,783,956
Ensembl chr12:33,783,891...33,783,961 		JBrowse link
G SPP1 secreted phosphoprotein 1 increases expression EXP Gentamicins results in increased expression of SPP1 protein CTD PMID:33290828 NCBI chr32:11,354,070...11,362,325
Ensembl chr32:11,353,953...11,362,069 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 494
    role 501
      biological role 494
        antimicrobial agent 122
          carbohydrate-containing antibiotic 7
            aminoglycoside antibiotic 7
              (13R)-13-dihydrocarminomycin 0
              13-deoxycarminomycin 0
              13-deoxydaunorubicin 0
              13-dihydrodaunorubicin + 0
              astromicin + 0
              carminomycin + 0
              daunorubicin + 0
              etimicin 0
              fortimicin KK1 0
              geneticin 0
              gentamycin + 7
              hygromycin + 0
              isepamicin + 0
              kanamycins + 0
              kasugamycin 0
              lividomycins + 0
              micronomicin + 0
              neomycin 0
              netilmycin + 0
              nystatin 0
              nystatins + 0
              paromomycin + 0
              ribostamycin + 0
              seldomycin 5 0
              sibiromycin 0
              sisomycin 0
              streptomycins + 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 494
    subatomic particle 494
      composite particle 494
        hadron 501
          baryon 494
            nucleon 494
              atomic nucleus 494
                atom 494
                  main group element atom 487
                    p-block element atom 487
                      carbon group element atom 476
                        carbon atom 482
                          organic molecular entity 475
                            heteroorganic entity 471
                              organochalcogen compound 425
                                organooxygen compound 423
                                  carbohydrates and carbohydrate derivatives 48
                                    carbohydrate 48
                                      carbohydrate derivative 43
                                        glycosyl compound 34
                                          glycoside 29
                                            aminoglycoside 12
                                              aminoglycoside antibiotic 7
                                                (13R)-13-dihydrocarminomycin 0
                                                13-deoxycarminomycin 0
                                                13-deoxydaunorubicin 0
                                                13-dihydrodaunorubicin + 0
                                                astromicin + 0
                                                carminomycin + 0
                                                daunorubicin + 0
                                                etimicin 0
                                                fortimicin KK1 0
                                                geneticin 0
                                                gentamycin + 7
                                                hygromycin + 0
                                                isepamicin + 0
                                                kanamycins + 0
                                                kasugamycin 0
                                                lividomycins + 0
                                                micronomicin + 0
                                                neomycin 0
                                                netilmycin + 0
                                                nystatin 0
                                                nystatins + 0
                                                paromomycin + 0
                                                ribostamycin + 0
                                                seldomycin 5 0
                                                sibiromycin 0
                                                sisomycin 0
                                                streptomycins + 0
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