Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:bromoacetate
go back to main search page
Accession:CHEBI:192408 term browser browse the term
Synonyms:exact_synonym: 2-bromoacetate
 related_synonym: Formula=C2H2BrO2;   InChI=1S/C2H3BrO2/c3-1-2(4)5/h1H2,(H,4,5)/p-1;   InChIKey=KDPAWGWELVVRCH-UHFFFAOYSA-M;   SMILES=BrCC([O-])=O
 xref: CAS:68-10-0;   Chemspider:5991
 xref_mesh: MESH:C016274


show annotations for term's descendants           Sort by:
bromoacetate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aifm1 apoptosis inducing factor, mitochondria associated 1 increases expression ISO bromoacetate results in increased expression of AIFM1 mRNA CTD PMID:19753638 NCBI chr  X:127,650,223...127,689,356
Ensembl chr  X:127,650,226...127,689,256 		JBrowse link
G Atm ATM serine/threonine kinase increases expression ISO bromoacetate results in increased expression of ATM mRNA CTD PMID:19753638 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Atp23 ATP23 metallopeptidase and ATP synthase assembly factor homolog decreases expression ISO bromoacetate results in decreased expression of ATP23 mRNA CTD PMID:19753638 NCBI chr 7:62,714,752...62,729,893
Ensembl chr 7:62,714,785...62,729,862 		JBrowse link
G Brca1 BRCA1, DNA repair associated decreases expression ISO bromoacetate results in decreased expression of BRCA1 mRNA CTD PMID:19753638 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Btg2 BTG anti-proliferation factor 2 decreases expression ISO bromoacetate results in decreased expression of BTG2 mRNA CTD PMID:19753638 NCBI chr13:45,531,881...45,535,642
Ensembl chr13:45,531,925...45,535,628 		JBrowse link
G Casp8 caspase 8 decreases expression
increases expression		 ISO bromoacetate results in decreased expression of CASP8 mRNA
bromoacetate results in increased expression of CASP8 mRNA		 CTD PMID:19753638 NCBI chr 9:60,263,863...60,312,542
Ensembl chr 9:60,264,075...60,312,542 		JBrowse link
G Ccl21 C-C motif chemokine ligand 21 decreases expression ISO bromoacetate results in decreased expression of CCL21 mRNA CTD PMID:19753638 NCBI chr 5:56,980,557...56,981,661
Ensembl chr 5:56,980,558...56,981,686 		JBrowse link
G Cryab crystallin, alpha B increases expression ISO bromoacetate results in increased expression of CRYAB mRNA CTD PMID:19753638 NCBI chr 8:51,093,441...51,099,161
Ensembl chr 8:51,093,441...51,099,157 		JBrowse link
G Csf2 colony stimulating factor 2 increases expression ISO bromoacetate results in increased expression of CSF2 mRNA CTD PMID:19753638 NCBI chr10:38,386,945...38,388,926
Ensembl chr10:38,386,945...38,389,199 		JBrowse link
G Ddit3 DNA-damage inducible transcript 3 increases expression ISO bromoacetate results in increased expression of DDIT3 mRNA CTD PMID:19753638 NCBI chr 7:63,115,645...63,121,203
Ensembl chr 7:63,116,380...63,121,201 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 decreases expression ISO bromoacetate results in decreased expression of DMC1 mRNA CTD PMID:19753638 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952 		JBrowse link
G Egr1 early growth response 1 increases expression
decreases expression		 ISO bromoacetate results in increased expression of EGR1 mRNA
bromoacetate results in decreased expression of EGR1 mRNA		 CTD PMID:19753638 NCBI chr18:26,462,967...26,466,766
Ensembl chr18:26,462,981...26,466,766 		JBrowse link
G Fmo1 flavin containing dimethylaniline monoxygenase 1 decreases expression ISO bromoacetate results in decreased expression of FMO1 mRNA CTD PMID:19753638 NCBI chr13:75,182,184...75,214,439
Ensembl chr13:75,182,176...75,214,647 		JBrowse link
G Gdf15 growth differentiation factor 15 increases expression ISO bromoacetate results in increased expression of GDF15 mRNA CTD PMID:19753638 NCBI chr16:18,804,457...18,808,043
Ensembl chr16:18,805,239...18,808,055 		JBrowse link
G Gsr glutathione-disulfide reductase increases expression ISO bromoacetate results in increased expression of GSR mRNA CTD PMID:19753638 NCBI chr16:58,482,209...58,525,256
Ensembl chr16:58,482,505...58,525,661 		JBrowse link
G Hmox1 heme oxygenase 1 decreases expression
increases expression		 ISO bromoacetate results in decreased expression of HMOX1 mRNA
bromoacetate results in increased expression of HMOX1 mRNA		 CTD PMID:19753638 PMID:31755747 NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079 		JBrowse link
G Hspa1l heat shock protein family A (Hsp70) member 1 like decreases expression ISO bromoacetate results in decreased expression of HSPA1L mRNA CTD PMID:19753638 NCBI chr20:3,848,843...3,855,571
Ensembl chr20:3,848,843...3,855,571 		JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 increases expression ISO bromoacetate results in increased expression of HSPA5 mRNA CTD PMID:19753638 NCBI chr 3:18,055,507...18,059,969
Ensembl chr 3:18,055,405...18,059,891 		JBrowse link
G Il1a interleukin 1 alpha decreases expression
increases expression		 ISO bromoacetate results in decreased expression of IL1A mRNA
bromoacetate results in increased expression of IL1A mRNA		 CTD PMID:19753638 NCBI chr 3:116,526,601...116,537,055
Ensembl chr 3:116,526,604...116,536,822 		JBrowse link
G Il1b interleukin 1 beta increases expression ISO bromoacetate results in increased expression of IL1B mRNA CTD PMID:19753638 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415 		JBrowse link
G Il6 interleukin 6 decreases expression ISO bromoacetate results in decreased expression of IL6 mRNA CTD PMID:19753638 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178 		JBrowse link
G Ip6k3 inositol hexakisphosphate kinase 3 increases expression ISO bromoacetate results in increased expression of IP6K3 mRNA CTD PMID:19753638 NCBI chr20:5,223,863...5,245,443
Ensembl chr20:5,224,120...5,245,428 		JBrowse link
G Lig1 DNA ligase 1 decreases expression ISO bromoacetate results in decreased expression of LIG1 mRNA CTD PMID:19753638 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413 		JBrowse link
G Lta lymphotoxin alpha decreases expression
increases expression		 ISO bromoacetate results in decreased expression of LTA mRNA
bromoacetate results in increased expression of LTA mRNA		 CTD PMID:19753638 NCBI chr20:3,618,853...3,621,324
Ensembl chr20:3,618,853...3,620,859 		JBrowse link
G Map2k6 mitogen-activated protein kinase kinase 6 decreases expression ISO bromoacetate results in decreased expression of MAP2K6 mRNA CTD PMID:19753638 NCBI chr10:95,373,304...95,490,406
Ensembl chr10:95,373,204...95,488,293 		JBrowse link
G Mlh1 mutL homolog 1 increases expression ISO bromoacetate results in increased expression of MLH1 mRNA CTD PMID:19753638 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mpg N-methylpurine-DNA glycosylase increases expression ISO bromoacetate results in increased expression of MPG mRNA CTD PMID:19753638 NCBI chr10:15,396,246...15,402,528
Ensembl chr10:15,395,782...15,402,520 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease increases expression ISO bromoacetate results in increased expression of MRE11 mRNA CTD PMID:19753638 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279 		JBrowse link
G Nfkbia NFKB inhibitor alpha increases expression ISO bromoacetate results in increased expression of NFKBIA mRNA CTD PMID:19753638 NCBI chr 6:72,858,713...72,861,941
Ensembl chr 6:72,858,712...72,861,941 		JBrowse link
G Nos2 nitric oxide synthase 2 decreases expression ISO bromoacetate results in decreased expression of NOS2 mRNA CTD PMID:19753638 NCBI chr10:63,815,308...63,851,208
Ensembl chr10:63,815,308...63,851,210 		JBrowse link
G Pcbp4 poly(rC) binding protein 4 decreases expression ISO bromoacetate results in decreased expression of PCBP4 mRNA CTD PMID:19753638 NCBI chr 8:107,092,688...107,103,276
Ensembl chr 8:107,093,013...107,103,276 		JBrowse link
G Ppp1r15a protein phosphatase 1, regulatory subunit 15A increases expression ISO bromoacetate results in increased expression of PPP1R15A mRNA CTD PMID:19753638 NCBI chr 1:96,000,053...96,003,128
Ensembl chr 1:96,000,058...96,003,171 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit increases expression ISO bromoacetate results in increased expression of PRKDC mRNA CTD PMID:19753638 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952 		JBrowse link
G Rad50 RAD50 double strand break repair protein decreases expression ISO bromoacetate results in decreased expression of RAD50 mRNA CTD PMID:19753638 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396 		JBrowse link
G Rad51 RAD51 recombinase increases expression ISO bromoacetate results in increased expression of RAD51 mRNA CTD PMID:19753638 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Rad9a RAD9 checkpoint clamp component A increases expression ISO bromoacetate results in increased expression of RAD9A mRNA CTD PMID:19753638 NCBI chr 1:201,488,511...201,553,582
Ensembl chr 1:201,487,136...201,553,608 		JBrowse link
G Rbbp8 RB binding protein 8, endonuclease increases expression ISO bromoacetate results in increased expression of RBBP8 mRNA CTD PMID:19753638 NCBI chr18:2,922,985...2,988,851
Ensembl chr18:2,921,286...2,988,846 		JBrowse link
G Sema4a semaphorin 4A increases expression ISO bromoacetate results in increased expression of SEMA4A mRNA CTD PMID:19753638 NCBI chr 2:173,896,432...173,917,903
Ensembl chr 2:173,896,439...173,914,442 		JBrowse link
G Tnf tumor necrosis factor decreases expression ISO bromoacetate results in decreased expression of TNF mRNA CTD PMID:19753638 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629 		JBrowse link
G Tnfsf10 TNF superfamily member 10 decreases expression ISO bromoacetate results in decreased expression of TNFSF10 mRNA CTD PMID:19753638 NCBI chr 2:110,199,835...110,227,239
Ensembl chr 2:110,207,916...110,225,135 		JBrowse link
G Trex1 three prime repair exonuclease 1 decreases expression ISO bromoacetate results in decreased expression of TREX1 mRNA CTD PMID:19753638 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796 		JBrowse link
G Tuba4a tubulin, alpha 4A increases acetylation ISO bromoacetate results in increased acetylation of TUBA4A protein CTD PMID:36174739 NCBI chr 9:76,709,617...76,714,327
Ensembl chr 9:76,709,614...76,713,918 		JBrowse link
G Xrcc2 X-ray repair cross complementing 2 decreases expression ISO bromoacetate results in decreased expression of XRCC2 mRNA CTD PMID:19753638 NCBI chr 4:9,423,873...9,502,980
Ensembl chr 4:9,423,898...9,442,482 		JBrowse link
G Xrcc3 X-ray repair cross complementing 3 decreases expression ISO bromoacetate results in decreased expression of XRCC3 mRNA CTD PMID:19753638 NCBI chr 6:130,863,405...130,873,765
Ensembl chr 6:130,863,959...130,872,444 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19932
    chemical entity 19930
      molecular entity 19930
        polyatomic entity 19887
          heteroatomic molecular entity 19841
            halide 18697
              organohalogen compound 18561
                bromoacetate 44
Path 2
Term Annotations click to browse term
  CHEBI ontology 19932
    subatomic particle 19930
      composite particle 19930
        hadron 19930
          baryon 19930
            nucleon 19930
              atomic nucleus 19930
                atom 19930
                  main group element atom 19876
                    p-block element atom 19876
                      carbon group element atom 19816
                        carbon atom 19812
                          organic molecular entity 19812
                            heteroorganic entity 19559
                              organochalcogen compound 19317
                                organooxygen compound 19231
                                  carbon oxoacid 18687
                                    carboxylic acid 18684
                                      bromoacetate 44
paths to the root