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ONTOLOGY REPORT - ANNOTATIONS


Term:thymidine
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Accession:CHEBI:17748 term browser browse the term
Definition:A pyrimidine 2'-deoxyribonucleoside having thymine as the nucleobase.
Synonyms:related_synonym: 1-(2-deoxy-beta-D-erythro-pentofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione;   2'-deoxy-5-methyluridine;   2'-deoxythymidine;   2'-thymidine;   5-methyl-2'-deoxyuridine;   Deoxythymidine;   Formula=C10H14N2O5;   InChI=1S/C10H14N2O5/c1-5-3-12(10(16)11-9(5)15)8-2-6(14)7(4-13)17-8/h3,6-8,13-14H,2,4H2,1H3,(H,11,15,16)/t6-,7+,8+/m0/s1;   InChIKey=IQFYYKKMVGJFEH-XLPZGREQSA-N;   SMILES=Cc1cn([C@H]2C[C@H](O)[C@@H](CO)O2)c(=O)[nH]c1=O;   T;   dThd;   thymine 2'-deoxyriboside
 alt_id: CHEBI:15244;   CHEBI:19273;   CHEBI:45782;   CHEBI:45834;   CHEBI:45917;   CHEBI:9579
 xref: Beilstein:89285;   CAS:50-89-5;   DrugBank:DB04485;   Gmelin:282610;   HMDB:HMDB0000273;   KEGG:C00214;   KNApSAcK:C00019698
 xref_mesh: MESH:D013936
 xref: MetaCyc:THYMIDINE;   PDBeChem:THM;   PMID:22770225;   PMID:2559771;   Reaxys:89285;   Wikipedia:Thymidine
 cyclic_relationship: is_enantiomer_of CHEBI:63624


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thymidine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acta2 actin alpha 2, smooth muscle JBrowse link 1 252,537,614 252,550,394 RGD:6480464
G Alpi alkaline phosphatase, intestinal JBrowse link 9 94,197,616 94,201,910 RGD:6480464
G Bax BCL2 associated X, apoptosis regulator JBrowse link 1 101,451,801 101,457,207 RGD:6480464
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:6480464
G Casp9 caspase 9 JBrowse link 5 160,356,211 160,373,774 RGD:6480464
G Csf1 colony stimulating factor 1 JBrowse link 2 210,522,370 210,550,546 RGD:6480464
G Csf2 colony stimulating factor 2 JBrowse link 10 39,602,089 39,604,070 RGD:6480464
G Edn1 endothelin 1 JBrowse link 17 22,136,814 22,143,745 RGD:6480464
G Faslg Fas ligand JBrowse link 13 79,696,811 79,717,581 RGD:6480464
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:6480464
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:6480464
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:6480464
G Mmp1 matrix metallopeptidase 1 JBrowse link 8 5,703,206 5,723,593 RGD:6480464
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase JBrowse link 17 66,210,444 66,295,014 RGD:6480464
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:6480464
G Slc28a1 solute carrier family 28 member 1 JBrowse link 1 142,948,942 142,992,410 RGD:6480464
G Slc29a1 solute carrier family 29 member 1 JBrowse link 9 17,784,468 17,799,008 RGD:6480464
G Slc29a2 solute carrier family 29 member 2 JBrowse link 1 220,306,622 220,314,631 RGD:6480464
G Tymp thymidine phosphorylase JBrowse link 7 130,342,481 130,347,845 RGD:6480464
G Tyms thymidylate synthetase JBrowse link 9 121,918,875 121,931,564 RGD:6480464
dTDP term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gale UDP-galactose-4-epimerase JBrowse link 5 154,310,453 154,314,959 RGD:6480464
G Uxs1 UDP-glucuronate decarboxylase 1 JBrowse link 9 11,165,006 11,240,329 RGD:6480464
dTMP term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 JBrowse link 1 141,874,354 141,893,674 RGD:6480464
G Tyms thymidylate synthetase JBrowse link 9 121,918,875 121,931,564 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19790
    role 19738
      biological role 19737
        biochemical role 19232
          metabolite 19208
            thymidine 23
              5'-O-\{[3-(benzoyloxy)-3-oxopropyl]carbamoyl\}thymidine 0
              5,6-dihydrothymidine 0
              alpha-tritiated thymidine 0
              polyoxin + 0
              thymidine phosphate + 4
              tritiated thymidine + 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19790
    subatomic particle 19788
      composite particle 19788
        hadron 19788
          baryon 19788
            nucleon 19788
              atomic nucleus 19788
                atom 19788
                  main group element atom 19674
                    p-block element atom 19674
                      carbon group element atom 19572
                        carbon atom 19561
                          organic molecular entity 19561
                            heteroorganic entity 19158
                              organochalcogen compound 18859
                                organooxygen compound 18776
                                  carbohydrates and carbohydrate derivatives 12164
                                    carbohydrate 12164
                                      carbohydrate derivative 11789
                                        glycosyl compound 10825
                                          N-glycosyl compound 5325
                                            nucleoside 5188
                                              deoxyribonucleoside 2716
                                                2'-deoxyribonucleoside 2198
                                                  pyrimidine 2'-deoxyribonucleoside 337
                                                    thymidine 23
                                                      5'-O-\{[3-(benzoyloxy)-3-oxopropyl]carbamoyl\}thymidine 0
                                                      5,6-dihydrothymidine 0
                                                      alpha-tritiated thymidine 0
                                                      polyoxin + 0
                                                      thymidine phosphate + 4
                                                      tritiated thymidine + 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.