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ONTOLOGY REPORT - ANNOTATIONS


Term:2-trans,6-trans-farnesyl diphosphate
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Accession:CHEBI:17407 term browser browse the term
Definition:The trans,trans-stereoisomer of farnesyl diphosphate.
Synonyms:exact_synonym: (2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate
 related_synonym: (2E,6E)-farnesol diphosphate;   (2E,6E)-farnesyl diphosphate;   (2E,6E)-farnesyl pyrophosphate;   (E,E)-farnesyl pyrophosphate;   (all-E)-farnesyl diphosphate;   2-trans,6-trans-farnesyl pyrophosphate;   Farnesyl diphosphate;   Farnesyl pyrophosphate;   Formula=C15H28O7P2;   InChI=1S/C15H28O7P2/c1-13(2)7-5-8-14(3)9-6-10-15(4)11-12-21-24(19,20)22-23(16,17)18/h7,9,11H,5-6,8,10,12H2,1-4H3,(H,19,20)(H2,16,17,18)/b14-9+,15-11+;   InChIKey=VWFJDQUYCIWHTN-YFVJMOTDSA-N;   SMILES=CC(C)=CCC\\C(C)=C\\CC\\C(C)=C\\COP(O)(=O)OP(O)(O)=O;   all-trans-farnesyl pyrophosphate;   trans,trans-Farnesyl diphosphate
 alt_id: CHEBI:10700;   CHEBI:11488;   CHEBI:11491;   CHEBI:12854;   CHEBI:12874;   CHEBI:19789;   CHEBI:42496
 xref: Beilstein:2482197 "Beilstein";   CAS:13058-04-3 "KEGG COMPOUND";   CAS:372-97-4 "ChemIDplus";   CAS:372-97-4 "KEGG COMPOUND";   KEGG:C00448;   KNApSAcK:C00000907;   KNApSAcK:C00007268;   LIPID_MAPS_instance:LMPR0103010002 "LIPID MAPS"
 xref_mesh: MESH:C004808
 xref: PDBeChem:FPP;   PMID:7753173 "Europe PMC";   Reaxys:2482197 "Reaxys"
 cyclic_relationship: is_conjugate_acid_of CHEBI:175763


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2-trans,6-trans-farnesyl diphosphate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Birc5 baculoviral IAP repeat-containing 5 JBrowse link 10 106,856,097 106,864,419 RGD:6480464
G Bmp2 bone morphogenetic protein 2 JBrowse link 3 126,335,963 126,346,771 RGD:6480464
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:6480464
G Cyp17a1 cytochrome P450, family 17, subfamily a, polypeptide 1 JBrowse link 1 266,422,127 266,429,947 RGD:6480464
G Fnta farnesyltransferase, CAAX box, alpha JBrowse link 16 70,834,957 70,854,724 RGD:6480464
G Fntb farnesyltransferase, CAAX box, beta JBrowse link 6 99,883,959 99,966,988 RGD:6480464
G Fos Fos proto-oncogene, AP-1 transcription factor subunit JBrowse link 6 109,300,433 109,303,299 RGD:6480464
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase JBrowse link 2 27,480,224 27,500,654 RGD:6480464
G Hras HRas proto-oncogene, GTPase JBrowse link 1 214,178,404 214,181,841 RGD:6480464
G Icam1 intercellular adhesion molecule 1 JBrowse link 8 22,035,287 22,047,049 RGD:6480464
G Il12b interleukin 12B JBrowse link 10 30,034,447 30,048,774 RGD:6480464
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:6480464
G Kras KRAS proto-oncogene, GTPase JBrowse link 4 179,482,562 179,515,483 RGD:6480464
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:6480464
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:6480464
G Mapk8 mitogen-activated protein kinase 8 JBrowse link 16 9,620,854 9,709,342 RGD:6480464
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:6480464
G Mvk mevalonate kinase JBrowse link 12 47,904,266 47,920,457 RGD:6480464
G Pon1 paraoxonase 1 JBrowse link 4 30,249,749 30,276,297 RGD:6480464
G Rac1 Rac family small GTPase 1 JBrowse link 12 13,090,316 13,111,841 RGD:6480464
G Rhoa ras homolog family member A JBrowse link 8 117,082,440 117,116,244 RGD:6480464
G Runx2 RUNX family transcription factor 2 JBrowse link 9 18,564,743 18,773,092 RGD:6480464
G Sele selectin E JBrowse link 13 82,355,234 82,365,323 RGD:6480464
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:6480464

Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19654
    role 19598
      biological role 19596
        biochemical role 19125
          metabolite 19093
            prokaryotic metabolite 18220
              bacterial metabolite 18220
                Escherichia coli metabolite 18116
                  2-trans,6-trans-farnesyl diphosphate 24
                    (2E,6E,10E)-omega-hydroxyfarnesyl diphosphate 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19654
    subatomic particle 19650
      composite particle 19650
        hadron 19650
          baryon 19650
            nucleon 19650
              atomic nucleus 19650
                atom 19650
                  main group element atom 19531
                    p-block element atom 19531
                      chalcogen 19217
                        oxygen atom 19171
                          oxygen molecular entity 19171
                            hydroxides 18951
                              oxoacid 18064
                                pnictogen oxoacid 8533
                                  phosphorus oxoacid 8426
                                    phosphoric acids 7312
                                      phosphoric acid 7312
                                        phosphoric acid derivative 6963
                                          phosphate 6963
                                            organic phosphate 6962
                                              phospholipid 286
                                                isoprenoid phosphate 72
                                                  prenol phosphate 72
                                                    polyprenol phosphate 63
                                                      farnesyl phosphate 24
                                                        farnesyl diphosphate 24
                                                          2-trans,6-trans-farnesyl diphosphate 24
                                                            (2E,6E,10E)-omega-hydroxyfarnesyl diphosphate 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.